Model info
Transcription factorTfap2a
ModelAP2A_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusvbdSCCYGRGGC
Best auROC (human)0.939
Best auROC (mouse)0.955
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)13
Aligned words500
TF familyAP-2 {1.3.1}
TF subfamilyAP-2alpha {1.3.1.0.1}
MGIMGI:104671
EntrezGeneGeneID:21418
(SSTAR profile)
UniProt IDAP2A_MOUSE
UniProt ACP34056
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.0766150000000003
0.0005 4.268915
0.0001 6.69731
GTEx tissue expression atlas Tfap2a expression
Motifs in JASPAR
PCM
ACGT
01203.0103.0117.077.0
0288.098.096.0218.0
03114.073.0222.091.0
042.0233.0257.08.0
051.0498.01.00.0
060.0487.00.013.0
0713.0106.036.0345.0
0839.00.0459.02.0
09271.048.0179.02.0
1031.00.0468.01.0
110.00.0500.00.0
127.0360.0130.03.0
PWM
ACGT
010.48-0.191-0.065-0.477
02-0.346-0.24-0.260.551
03-0.091-0.5290.569-0.313
04-3.5730.6170.714-2.584
05-3.9031.373-3.903-4.4
06-4.41.351-4.4-2.163
07-2.163-0.163-1.2151.007
08-1.138-4.41.292-3.573
090.767-0.9380.355-3.573
10-1.358-4.41.311-3.903
11-4.4-4.41.377-4.4
12-2.6941.050.039-3.325