Model info
Transcription factorTfap2a
ModelAP2A_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusvbdSCCYGRGGC
Best auROC (human)0.939472681760814
Best auROC (mouse)0.9547316206728359
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)13
Aligned words500
TF familyAP-2{1.3.1}
TF subfamilyAP-2alpha{1.3.1.0.1}
MGI104671
EntrezGene21418
UniProt IDAP2A_MOUSE
UniProt ACP34056
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.06882
0.0005 4.27473
0.0001 6.69329
GTEx tissue expression atlas Tfap2a expression
ReMap ChIP-seq dataset list Tfap2a datasets
Motifs in JASPAR
PCM
ACGT
01203.0103.0117.077.0
0288.098.096.0218.0
03114.073.0222.091.0
042.0233.0257.08.0
051.0498.01.00.0
060.0487.00.013.0
0713.0106.036.0345.0
0839.00.0459.02.0
09271.048.0179.02.0
1031.00.0468.01.0
110.00.0500.00.0
127.0360.0130.03.0
PWM
ACGT
010.48-0.191-0.065-0.477
02-0.346-0.24-0.260.551
03-0.091-0.5290.569-0.313
04-3.5730.6170.714-2.584
05-3.9031.373-3.903-4.4
06-4.41.351-4.4-2.163
07-2.163-0.163-1.2151.007
08-1.138-4.41.292-3.573
090.767-0.9380.355-3.573
10-1.358-4.41.311-3.903
11-4.4-4.41.377-4.4
12-2.6941.050.039-3.325