Model info
Transcription factorTfap2a
ModelAP2A_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusvbdSCCYGRGGC
Best auROC (human)0.939472681760814
Best auROC (mouse)0.9547316206728359
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)13
Aligned words500
TF familyAP-2{1.3.1}
TF subfamilyAP-2alpha{1.3.1.0.1}
MGI104671
EntrezGene21418
UniProt IDAP2A_MOUSE
UniProt ACP34056
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.06882
0.0005 4.27473
0.0001 6.69329
GTEx tissue expression atlas Tfap2a expression
Motifs in JASPAR
PCM
ACGT
01203.0103.0117.077.0
0288.098.096.0218.0
03114.073.0222.091.0
042.0233.0257.08.0
051.0498.01.00.0
060.0487.00.013.0
0713.0106.036.0345.0
0839.00.0459.02.0
09271.048.0179.02.0
1031.00.0468.01.0
110.00.0500.00.0
127.0360.0130.03.0
PWM
ACGT
010.48-0.191-0.065-0.477
02-0.346-0.24-0.260.551
03-0.091-0.5290.569-0.313
04-3.5730.6170.714-2.584
05-3.9031.373-3.903-4.4
06-4.41.351-4.4-2.163
07-2.163-0.163-1.2151.007
08-1.138-4.41.292-3.573
090.767-0.9380.355-3.573
10-1.358-4.41.311-3.903
11-4.4-4.41.377-4.4
12-2.6941.050.039-3.325