Model info
| Transcription factor | Tfap2c | ||||||||
| Model | AP2C_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bdSCCYCRGGShn | ||||||||
| Best auROC (human) | 0.9386992462308592 | ||||||||
| Best auROC (mouse) | 0.9563446102167853 | ||||||||
| Peak sets in benchmark (human) | 18 | ||||||||
| Peak sets in benchmark (mouse) | 6 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | AP-2{1.3.1} | ||||||||
| TF subfamily | AP-2gamma{1.3.1.0.3} | ||||||||
| MGI | 106032 | ||||||||
| EntrezGene | 21420 | ||||||||
| UniProt ID | AP2C_MOUSE | ||||||||
| UniProt AC | Q61312 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Tfap2c expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 77.0 | 153.0 | 81.0 | 189.0 |
| 02 | 132.0 | 66.0 | 217.0 | 85.0 |
| 03 | 4.0 | 191.0 | 288.0 | 17.0 |
| 04 | 0.0 | 497.0 | 1.0 | 2.0 |
| 05 | 1.0 | 411.0 | 1.0 | 87.0 |
| 06 | 0.0 | 213.0 | 63.0 | 224.0 |
| 07 | 1.0 | 442.0 | 0.0 | 57.0 |
| 08 | 334.0 | 5.0 | 140.0 | 21.0 |
| 09 | 5.0 | 0.0 | 495.0 | 0.0 |
| 10 | 0.0 | 0.0 | 496.0 | 4.0 |
| 11 | 9.0 | 276.0 | 212.0 | 3.0 |
| 12 | 84.0 | 207.0 | 81.0 | 128.0 |
| 13 | 179.0 | 108.0 | 122.0 | 91.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.477 | 0.2 | -0.427 | 0.409 |
| 02 | 0.054 | -0.628 | 0.546 | -0.38 |
| 03 | -3.126 | 0.42 | 0.828 | -1.92 |
| 04 | -4.4 | 1.371 | -3.903 | -3.573 |
| 05 | -3.903 | 1.182 | -3.903 | -0.357 |
| 06 | -4.4 | 0.528 | -0.673 | 0.578 |
| 07 | -3.903 | 1.254 | -4.4 | -0.771 |
| 08 | 0.975 | -2.961 | 0.112 | -1.725 |
| 09 | -2.961 | -4.4 | 1.367 | -4.4 |
| 10 | -4.4 | -4.4 | 1.369 | -3.126 |
| 11 | -2.484 | 0.785 | 0.523 | -3.325 |
| 12 | -0.392 | 0.5 | -0.427 | 0.023 |
| 13 | 0.355 | -0.144 | -0.024 | -0.313 |