Model info
Transcription factorTfap2c
ModelAP2C_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusbdSCCYCRGGShn
Best auROC (human)0.939
Best auROC (mouse)0.956
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)6
Aligned words500
TF familyAP-2 {1.3.1}
TF subfamilyAP-2gamma {1.3.1.0.3}
MGIMGI:106032
EntrezGeneGeneID:21420
(SSTAR profile)
UniProt IDAP2C_MOUSE
UniProt ACQ61312
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.48911
0.0005 4.63101
0.0001 7.05012
GTEx tissue expression atlas Tfap2c expression
Motifs in JASPAR
PCM
ACGT
0177.0153.081.0189.0
02132.066.0217.085.0
034.0191.0288.017.0
040.0497.01.02.0
051.0411.01.087.0
060.0213.063.0224.0
071.0442.00.057.0
08334.05.0140.021.0
095.00.0495.00.0
100.00.0496.04.0
119.0276.0212.03.0
1284.0207.081.0128.0
13179.0108.0122.091.0
PWM
ACGT
01-0.4770.2-0.4270.409
020.054-0.6280.546-0.38
03-3.1260.420.828-1.92
04-4.41.371-3.903-3.573
05-3.9031.182-3.903-0.357
06-4.40.528-0.6730.578
07-3.9031.254-4.4-0.771
080.975-2.9610.112-1.725
09-2.961-4.41.367-4.4
10-4.4-4.41.369-3.126
11-2.4840.7850.523-3.325
12-0.3920.5-0.4270.023
130.355-0.144-0.024-0.313