Model info
| Transcription factor | Ascl2 | ||||||||
| Model | ASCL2_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vCASCTGCY | ||||||||
| Best auROC (human) | 0.594 | ||||||||
| Best auROC (mouse) | 0.92 | ||||||||
| Peak sets in benchmark (human) | 8 | ||||||||
| Peak sets in benchmark (mouse) | 9 | ||||||||
| Aligned words | 505 | ||||||||
| TF family | MyoD / ASC-related factors {1.2.2} | ||||||||
| TF subfamily | Achaete-Scute-like factors {1.2.2.2} | ||||||||
| MGI | MGI:96920 | ||||||||
| EntrezGene | GeneID:17173 (SSTAR profile) | ||||||||
| UniProt ID | ASCL2_MOUSE | ||||||||
| UniProt AC | O35885 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Ascl2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 131.0 | 176.0 | 169.0 | 23.0 |
| 02 | 1.0 | 494.0 | 2.0 | 2.0 |
| 03 | 492.0 | 3.0 | 1.0 | 3.0 |
| 04 | 3.0 | 176.0 | 293.0 | 27.0 |
| 05 | 7.0 | 489.0 | 1.0 | 2.0 |
| 06 | 2.0 | 2.0 | 0.0 | 495.0 |
| 07 | 1.0 | 5.0 | 481.0 | 12.0 |
| 08 | 3.0 | 433.0 | 7.0 | 56.0 |
| 09 | 51.0 | 147.0 | 4.0 | 297.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.048 | 0.341 | 0.3 | -1.638 |
| 02 | -3.901 | 1.367 | -3.571 | -3.571 |
| 03 | 1.363 | -3.323 | -3.901 | -3.323 |
| 04 | -3.323 | 0.341 | 0.847 | -1.487 |
| 05 | -2.692 | 1.357 | -3.901 | -3.571 |
| 06 | -3.571 | -3.571 | -4.398 | 1.369 |
| 07 | -3.901 | -2.959 | 1.34 | -2.232 |
| 08 | -3.323 | 1.236 | -2.692 | -0.786 |
| 09 | -0.877 | 0.162 | -3.124 | 0.86 |