Model info
Transcription factorBARX1
ModelBARX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
D
Motif rank
0
ConsensusnWMAKKSYTThh
Best auROC (human)0.6081634727357754
Best auROC (mouse)0.831429002644883
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)2
Aligned words461
TF familyNK-related factors{3.1.2}
TF subfamilyBARX{3.1.2.2}
HGNC955
EntrezGene56033
UniProt IDBARX1_HUMAN
UniProt ACQ9HBU1
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.99562
0.0005 6.77452
0.0001 8.32085
GTEx tissue expression atlas BARX1 expression
ReMap ChIP-seq dataset list BARX1 datasets
Motifs in JASPAR
PCM
ACGT
0146.0167.0124.0124.0
02168.06.020.0267.0
03349.085.021.06.0
04442.01.04.014.0
0518.021.0137.0285.0
0630.010.0197.0224.0
0741.068.0342.010.0
0821.072.015.0353.0
0929.019.015.0398.0
108.010.020.0423.0
1168.0152.033.0208.0
1271.0120.036.0234.0
PWM
ACGT
01-0.8990.3670.0720.072
020.373-2.741-1.6910.833
031.099-0.3-1.645-2.741
041.334-3.831-3.05-2.017
05-1.788-1.6450.1710.898
06-1.309-2.3150.5310.658
07-1.01-0.5191.079-2.315
08-1.645-0.463-1.9551.11
09-1.342-1.738-1.9551.23
10-2.506-2.315-1.6911.291
11-0.5190.274-1.2180.585
12-0.4760.04-1.1350.702