Model info
| Transcription factor | BCL6 (GeneCards) | ||||||||
| Model | BCL6_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bdMYYTCYAGGAA | ||||||||
| Best auROC (human) | 0.802 | ||||||||
| Best auROC (mouse) | 0.874 | ||||||||
| Peak sets in benchmark (human) | 27 | ||||||||
| Peak sets in benchmark (mouse) | 11 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | BCL6 factors {2.3.3.22} | ||||||||
| HGNC | HGNC:1001 | ||||||||
| EntrezGene | GeneID:604 (SSTAR profile) | ||||||||
| UniProt ID | BCL6_HUMAN | ||||||||
| UniProt AC | P41182 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | BCL6 expression | ||||||||
| ReMap ChIP-seq dataset list | BCL6 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 80.0 | 128.0 | 95.0 | 197.0 |
| 02 | 86.0 | 63.0 | 207.0 | 144.0 |
| 03 | 72.0 | 319.0 | 69.0 | 40.0 |
| 04 | 47.0 | 112.0 | 8.0 | 333.0 |
| 05 | 19.0 | 95.0 | 56.0 | 330.0 |
| 06 | 8.0 | 21.0 | 13.0 | 458.0 |
| 07 | 3.0 | 415.0 | 10.0 | 72.0 |
| 08 | 12.0 | 217.0 | 47.0 | 224.0 |
| 09 | 485.0 | 7.0 | 8.0 | 0.0 |
| 10 | 86.0 | 1.0 | 386.0 | 27.0 |
| 11 | 13.0 | 35.0 | 420.0 | 32.0 |
| 12 | 418.0 | 22.0 | 42.0 | 18.0 |
| 13 | 410.0 | 27.0 | 37.0 | 26.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.439 | 0.023 | -0.271 | 0.45 |
| 02 | -0.368 | -0.673 | 0.5 | 0.14 |
| 03 | -0.543 | 0.929 | -0.584 | -1.114 |
| 04 | -0.958 | -0.108 | -2.584 | 0.972 |
| 05 | -1.818 | -0.271 | -0.788 | 0.963 |
| 06 | -2.584 | -1.725 | -2.163 | 1.29 |
| 07 | -3.325 | 1.191 | -2.394 | -0.543 |
| 08 | -2.234 | 0.546 | -0.958 | 0.578 |
| 09 | 1.347 | -2.694 | -2.584 | -4.4 |
| 10 | -0.368 | -3.903 | 1.119 | -1.489 |
| 11 | -2.163 | -1.242 | 1.203 | -1.328 |
| 12 | 1.199 | -1.681 | -1.067 | -1.868 |
| 13 | 1.179 | -1.489 | -1.189 | -1.525 |