Model info
Transcription factorARNTL
(GeneCards)
ModelBMAL1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusbnbvnnnvdvCACGTGMb
Best auROC (human)0.881
Best auROC (mouse)0.868
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)15
Aligned words503
TF familyPAS domain factors {1.2.5}
TF subfamilyArnt-like factors {1.2.5.2}
HGNCHGNC:701
EntrezGeneGeneID:406
(SSTAR profile)
UniProt IDBMAL1_HUMAN
UniProt ACO00327
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.58436
0.0005 8.29591
0.0001 11.88186
GTEx tissue expression atlas ARNTL expression
ReMap ChIP-seq dataset list ARNTL datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0114.010.09.026.065.057.055.027.025.048.018.051.013.012.046.019.0
0220.019.030.048.021.024.040.042.019.032.026.051.018.07.067.031.0
0332.014.028.04.015.030.025.012.027.057.064.015.08.041.0103.020.0
0414.035.020.013.027.064.017.034.043.076.034.067.02.021.015.013.0
0520.022.029.015.048.068.039.041.019.042.011.014.023.027.065.012.0
0619.025.050.016.043.042.031.043.027.039.053.025.08.035.029.010.0
0719.014.040.024.057.024.040.020.038.035.063.027.012.018.050.014.0
0829.021.058.018.031.012.030.018.051.028.086.028.011.09.041.024.0
0951.033.031.07.025.035.010.00.047.0114.038.016.023.031.030.04.0
1010.0134.02.00.09.0196.05.03.08.097.02.02.01.026.00.00.0
1120.00.07.01.0422.06.018.07.08.00.01.00.03.02.00.00.0
127.0365.04.077.03.02.00.03.03.019.00.04.00.07.00.01.0
130.00.013.00.06.06.0379.02.00.00.04.00.03.02.075.05.0
140.00.00.09.00.01.00.07.07.02.01.0461.00.00.00.07.0
150.00.06.01.00.00.03.00.00.00.01.00.08.01.0464.011.0
162.01.05.00.00.01.00.00.0328.065.039.042.07.00.02.03.0
1728.0149.0118.042.024.014.015.014.05.07.022.012.07.010.013.015.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.778-1.104-1.205-0.1720.7360.6050.57-0.134-0.210.435-0.5330.495-0.8