Model info
Transcription factorT
ModelBRAC_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusbYvvMRdvnvdSTGWKARdd
Best auROC (human)0.835236927046628
Best auROC (mouse)0.8177607198713152
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)10
Aligned words500
TF familyBrachyury-related factors{6.5.1}
TF subfamilyT (Brachyury){6.5.1.0.1}
HGNC11515
EntrezGene6862
UniProt IDBRAC_HUMAN
UniProt ACO15178
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.09601
0.0005 5.93831
0.0001 7.65511
PCM
ACGT
0160.0126.073.0241.0
0239.0101.053.0307.0
03168.0156.0112.064.0
04167.082.0190.061.0
0569.0337.064.030.0
06335.036.081.048.0
0799.087.0204.0110.0
0891.0126.0201.082.0
09122.083.0170.0125.0
10235.095.0115.055.0
11172.026.0219.083.0
1230.064.0374.032.0
1319.08.02.0471.0
141.07.0485.07.0
15112.026.022.0340.0
1616.076.0316.092.0
17453.010.031.06.0
18330.029.0111.030.0
19175.044.0131.0150.0
20100.068.099.0233.0
PWM
ACGT
01-0.7210.008-0.5290.651
02-1.138-0.21-0.8410.891
030.2930.219-0.108-0.658
040.287-0.4150.415-0.705
05-0.5840.984-0.658-1.389
060.978-1.215-0.427-0.938
07-0.23-0.3570.485-0.126
08-0.3130.0080.47-0.415
09-0.024-0.4030.3040.0
100.626-0.271-0.082-0.805
110.316-1.5250.555-0.403
12-1.389-0.6581.088-1.328
13-1.818-2.584-3.5731.317
14-3.903-2.6941.347-2.694
15-0.108-1.525-1.6810.993
16-1.975-0.490.92-0.302
171.279-2.394-1.358-2.819
180.963-1.421-0.117-1.389
190.333-1.0220.0460.18
20-0.22-0.599-0.230.617