Model info
Transcription factorT
ModelBRAC_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusbYvvMRdvnvdSTGWKARdd
Best auROC (human)0.835236927046628
Best auROC (mouse)0.8177607198713152
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)10
Aligned words500
TF familyBrachyury-related factors{6.5.1}
TF subfamilyT (Brachyury){6.5.1.0.1}
HGNC11515
EntrezGene6862
UniProt IDBRAC_HUMAN
UniProt ACO15178
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.10091
0.0005 5.93521
0.0001 7.654960000000001
GTEx tissue expression atlas T expression
ReMap ChIP-seq dataset list T datasets
Motifs in JASPAR
PCM
ACGT
0160.0126.073.0241.0
0239.0101.053.0307.0
03168.0156.0112.064.0
04167.082.0190.061.0
0569.0337.064.030.0
06335.036.081.048.0
0799.087.0204.0110.0
0891.0126.0201.082.0
09122.083.0170.0125.0
10235.095.0115.055.0
11172.026.0219.083.0
1230.064.0374.032.0
1319.08.02.0471.0
141.07.0485.07.0
15112.026.022.0340.0
1616.076.0316.092.0
17453.010.031.06.0
18330.029.0111.030.0
19175.044.0131.0150.0
20100.068.099.0233.0
PWM
ACGT
01-0.7210.008-0.5290.651
02-1.138-0.21-0.8410.891
030.2930.219-0.108-0.658
040.287-0.4150.415-0.705
05-0.5840.984-0.658-1.389
060.978-1.215-0.427-0.938
07-0.23-0.3570.485-0.126
08-0.3130.0080.47-0.415
09-0.024-0.4030.3040.0
100.626-0.271-0.082-0.805
110.316-1.5250.555-0.403
12-1.389-0.6581.088-1.328
13-1.818-2.584-3.5731.317
14-3.903-2.6941.347-2.694
15-0.108-1.525-1.6810.993
16-1.975-0.490.92-0.302
171.279-2.394-1.358-2.819
180.963-1.421-0.117-1.389
190.333-1.0220.0460.18
20-0.22-0.599-0.230.617