Model info
Transcription factorCdx2
ModelCDX2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusbTTTATKRYhbb
Best auROC (human)0.9155735130463556
Best auROC (mouse)0.9904065244475825
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)23
Aligned words500
TF familyHOX-related factors{3.1.1}
TF subfamilyCDX (Caudal type homeobox){3.1.1.9}
MGI88361
EntrezGene12591
UniProt IDCDX2_MOUSE
UniProt ACP43241
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.21271
0.0005 6.16513
0.0001 8.0368
GTEx tissue expression atlas Cdx2 expression
Motifs in JASPAR
PCM
ACGT
0159.081.065.0295.0
029.04.06.0481.0
034.06.01.0489.0
0417.09.010.0464.0
05475.09.08.08.0
061.031.06.0462.0
0756.03.0230.0211.0
08193.06.0281.020.0
0919.0377.031.073.0
1062.0215.020.0203.0
1157.0125.080.0238.0
1246.0113.061.0280.0
PWM
ACGT
01-0.737-0.427-0.6430.852
02-2.484-3.126-2.8191.338
03-3.126-2.819-3.9031.355
04-1.92-2.484-2.3941.303
051.326-2.484-2.584-2.584
06-3.903-1.358-2.8191.298
07-0.788-3.3250.6040.519
080.43-2.8190.803-1.77
09-1.8181.096-1.358-0.529
10-0.6890.537-1.770.48
11-0.7710.0-0.4390.638
12-0.979-0.1-0.7050.8