Model info
Transcription factorCdx2
ModelCDX2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusbTTTATKRYhbb
Best auROC (human)0.9155735130463556
Best auROC (mouse)0.9904065244475825
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)23
Aligned words500
TF familyHOX-related factors{3.1.1}
TF subfamilyCDX (Caudal type homeobox){3.1.1.9}
MGI88361
EntrezGene12591
UniProt IDCDX2_MOUSE
UniProt ACP43241
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.21271
0.0005 6.16513
0.0001 8.0368
GTEx tissue expression atlas Cdx2 expression
ReMap ChIP-seq dataset list Cdx2 datasets
Motifs in JASPAR
PCM
ACGT
0159.081.065.0295.0
029.04.06.0481.0
034.06.01.0489.0
0417.09.010.0464.0
05475.09.08.08.0
061.031.06.0462.0
0756.03.0230.0211.0
08193.06.0281.020.0
0919.0377.031.073.0
1062.0215.020.0203.0
1157.0125.080.0238.0
1246.0113.061.0280.0
PWM
ACGT
01-0.737-0.427-0.6430.852
02-2.484-3.126-2.8191.338
03-3.126-2.819-3.9031.355
04-1.92-2.484-2.3941.303
051.326-2.484-2.584-2.584
06-3.903-1.358-2.8191.298
07-0.788-3.3250.6040.519
080.43-2.8190.803-1.77
09-1.8181.096-1.358-0.529
10-0.6890.537-1.770.48
11-0.7710.0-0.4390.638
12-0.979-0.1-0.7050.8