Model info
Transcription factorCdx4
ModelCDX4_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusWRATTdAYdRbh
Best auROC (human)
Best auROC (mouse)0.9549560633692685
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)7
Aligned words500
TF familyHOX-related factors{3.1.1}
TF subfamilyCDX (Caudal type homeobox){3.1.1.9}
MGI88362
EntrezGene12592
UniProt IDCDX4_MOUSE
UniProt ACQ07424
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.27011
0.0005 6.11051
0.0001 7.79215
GTEx tissue expression atlas Cdx4 expression
ReMap ChIP-seq dataset list Cdx4 datasets
Motifs in JASPAR
PCM
ACGT
01125.09.056.0310.0
0292.03.0351.054.0
03411.023.08.058.0
0411.05.010.0474.0
058.03.011.0478.0
0642.023.042.0393.0
07481.07.010.02.0
0820.091.019.0370.0
0985.016.0234.0165.0
10104.027.0322.047.0
1138.0281.080.0101.0
1297.0207.060.0136.0
PWM
ACGT
010.0-2.484-0.7880.901
02-0.302-3.3251.025-0.823
031.182-1.64-2.584-0.754
04-2.311-2.961-2.3941.324
05-2.584-3.325-2.3111.332
06-1.067-1.64-1.0671.137
071.338-2.694-2.394-3.573
08-1.77-0.313-1.8181.077
09-0.38-1.9750.6210.275
10-0.181-1.4890.939-0.958
11-1.1630.803-0.439-0.21
12-0.250.5-0.7210.083