Model info
Transcription factorClock
ModelCLOCK_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
C
Motif rank
0
ConsensusSdvnCAMRYGvvvh
Best auROC (human)0.6582184697413299
Best auROC (mouse)0.7345348064028436
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)22
Aligned words253
TF familyPAS domain factors{1.2.5}
TF subfamilyArnt-like factors{1.2.5.2}
MGI99698
EntrezGene12753
UniProt IDCLOCK_MOUSE
UniProt ACO08785
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.793559999999999
0.0005 5.39201
0.0001 6.603060000000001
GTEx tissue expression atlas Clock expression
Motifs in JASPAR
PCM
ACGT
0140.0151.045.016.0
02107.029.048.068.0
0351.037.0129.035.0
0485.081.042.044.0
0524.0214.011.03.0
06204.016.011.021.0
0739.0153.032.028.0
0864.014.0162.012.0
0924.030.011.0187.0
1022.06.0217.07.0
11101.079.045.027.0
1293.061.071.027.0
1356.098.073.025.0
14124.075.06.047.0
PWM
ACGT
01-0.4420.862-0.328-1.309
020.521-0.751-0.2650.075
03-0.206-0.5170.706-0.571
040.2940.247-0.395-0.35
05-0.9311.208-1.649-2.687
061.16-1.309-1.649-1.057
07-0.4660.875-0.657-0.784
080.015-1.4320.931-1.571
09-0.931-0.719-1.6491.074
10-1.013-2.1661.221-2.039
110.4640.222-0.328-0.819
120.383-0.0320.117-0.819
13-0.1150.4340.144-0.892
140.6670.171-2.166-0.286