Model info
Transcription factorClock
ModelCLOCK_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
C
Motif rank
0
ConsensusSdvnCAMRYGvvvh
Best auROC (human)0.6582184697413299
Best auROC (mouse)0.7345348064028436
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)22
Aligned words253
TF familyPAS domain factors{1.2.5}
TF subfamilyArnt-like factors{1.2.5.2}
MGI99698
EntrezGene12753
UniProt IDCLOCK_MOUSE
UniProt ACO08785
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.78991
0.0005 5.39431
0.0001 6.60351
GTEx tissue expression atlas Clock expression
ReMap ChIP-seq dataset list Clock datasets
Motifs in JASPAR
PCM
ACGT
0140.0151.045.016.0
02107.029.048.068.0
0351.037.0129.035.0
0485.081.042.044.0
0524.0214.011.03.0
06204.016.011.021.0
0739.0153.032.028.0
0864.014.0162.012.0
0924.030.011.0187.0
1022.06.0217.07.0
11101.079.045.027.0
1293.061.071.027.0
1356.098.073.025.0
14124.075.06.047.0
PWM
ACGT
01-0.4420.862-0.328-1.309
020.521-0.751-0.2650.075
03-0.206-0.5170.706-0.571
040.2940.247-0.395-0.35
05-0.9311.208-1.649-2.687
061.16-1.309-1.649-1.057
07-0.4660.875-0.657-0.784
080.015-1.4320.931-1.571
09-0.931-0.719-1.6491.074
10-1.013-2.1661.221-2.039
110.4640.222-0.328-0.819
120.383-0.0320.117-0.819
13-0.1150.4340.144-0.892
140.6670.171-2.166-0.286