Model info
| Transcription factor | NR2F1 | ||||||||
| Model | COT1_HUMAN.H11MO.1.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | C | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | bvdRAGGKCAvvR | ||||||||
| Best auROC (human) | 0.8511567179058595 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 478 | ||||||||
| TF family | RXR-related receptors (NR2){2.1.3} | ||||||||
| TF subfamily | COUP-like receptors (NR2F){2.1.3.5} | ||||||||
| HGNC | 7975 | ||||||||
| EntrezGene | 7025 | ||||||||
| UniProt ID | COT1_HUMAN | ||||||||
| UniProt AC | P10589 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NR2F1 expression | ||||||||
| ReMap ChIP-seq dataset list | NR2F1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 40.0 | 93.0 | 183.0 | 162.0 |
| 02 | 60.0 | 240.0 | 136.0 | 42.0 |
| 03 | 283.0 | 52.0 | 80.0 | 63.0 |
| 04 | 176.0 | 16.0 | 283.0 | 3.0 |
| 05 | 344.0 | 0.0 | 133.0 | 1.0 |
| 06 | 4.0 | 1.0 | 455.0 | 18.0 |
| 07 | 3.0 | 0.0 | 462.0 | 13.0 |
| 08 | 4.0 | 33.0 | 104.0 | 337.0 |
| 09 | 16.0 | 437.0 | 13.0 | 12.0 |
| 10 | 474.0 | 1.0 | 3.0 | 0.0 |
| 11 | 107.0 | 74.0 | 251.0 | 46.0 |
| 12 | 150.0 | 70.0 | 218.0 | 40.0 |
| 13 | 70.0 | 46.0 | 304.0 | 58.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.069 | -0.247 | 0.422 | 0.301 |
| 02 | -0.676 | 0.691 | 0.128 | -1.022 |
| 03 | 0.855 | -0.816 | -0.395 | -0.629 |
| 04 | 0.383 | -1.932 | 0.855 | -3.283 |
| 05 | 1.049 | -4.363 | 0.106 | -3.863 |
| 06 | -3.084 | -3.863 | 1.328 | -1.824 |
| 07 | -3.283 | -4.363 | 1.343 | -2.119 |
| 08 | -3.084 | -1.254 | -0.137 | 1.029 |
| 09 | -1.932 | 1.287 | -2.119 | -2.19 |
| 10 | 1.368 | -3.863 | -3.283 | -4.363 |
| 11 | -0.109 | -0.471 | 0.735 | -0.935 |
| 12 | 0.225 | -0.526 | 0.595 | -1.069 |
| 13 | -0.526 | -0.935 | 0.926 | -0.709 |