Model info
Transcription factorCrx
ModelCRX_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusnvddvRGATTAdn
Best auROC (human)
Best auROC (mouse)0.9464239912342145
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)8
Aligned words501
TF familyPaired-related HD factors{3.1.3}
TF subfamilyOTX{3.1.3.17}
MGI1194883
EntrezGene12951
UniProt IDCRX_MOUSE
UniProt ACO54751
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.03111
0.0005 12.12822
0.0001 15.76381
GTEx tissue expression atlas Crx expression
ReMap ChIP-seq dataset list Crx datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0162.017.046.013.038.028.010.016.030.018.032.011.0102.023.040.014.0
02160.08.057.07.036.011.06.033.062.018.028.020.015.015.020.04.0
0350.015.0162.046.025.08.04.015.040.015.047.09.07.011.044.02.0
0422.014.074.012.026.013.06.04.0123.053.066.015.019.018.029.06.0
0527.01.0161.01.045.07.045.01.063.06.0104.02.03.00.034.00.0
060.00.0138.00.01.00.012.01.05.04.0335.00.00.00.04.00.0
076.00.00.00.04.00.00.00.0401.087.01.00.01.00.00.00.0
080.01.00.0411.00.00.00.087.00.00.00.01.00.00.00.00.0
090.00.00.00.00.00.00.01.00.00.00.00.010.012.01.0476.0
1010.00.00.00.012.00.00.00.01.00.00.00.0444.03.010.020.0
11127.053.0197.090.03.00.00.00.05.02.00.03.06.03.011.00.0
1242.022.064.013.027.014.05.012.042.079.052.035.024.038.024.07.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.679-0.5990.383-0.860.193-0.108-1.114-0.658-0.04-0.5430.023-1.0221.174-0.3020.244-0.788
021.623-1.3280.595-1.4540.14-1.022-1.60.0540.679-0.543-0.108-0.439-0.721-0.721-0.439-1.975
030.465-0.7211.6360.383-0.22-1.328-1.975-0.7210.244-0.7210.404-1.215-1.454-1.0220.339-2.584
04-0.346-0.7880.855-0.938-0.181-0.86-1.6-1.9751.3610.5230.741-0.721-0.49-0.543-0.074-1.6
05-0.144-3.1261.629-3.1260.361-1.4540.361-3.1260.695-1.61.194-2.584-2.234-4.40.083-4.4
06-4.4-4.41.476-4.4-3.126-4.4-0.938-3.126-1.77-1.9752.361-4.4-4.4-4.4-1.975-4.4
07-1.6-4.4-4.4-4.4-1.975-4.4-4.4-4.42.5411.016-3.126-4.4-3.126-4.4-4.4-4.4
08-4.4-3.126-4.42.565-4.4-4.4-4.41.016-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.4
09-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.4-1.114-0.938-3.1262.712
10-1.114-4.4-4.4-4.4-0.938-4.4-4.4-4.4-3.126-4.4-4.4-4.42.642-2.234-1.114-0.439
111.3930.5231.8311.05-2.234-4.4-4.4-4.4-1.77-2.584-4.4-2.234-1.6-2.234-1.022-4.4
120.293-0.3460.711-0.86-0.144-0.788-1.77-0.9380.2930.920.5040.112-0.260.193-0.26-1.454