Transcription factor | Crx | ||||||||
Model | CRX_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 13 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nvddvRGATTAdn | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.946 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 8 | ||||||||
Aligned words | 501 | ||||||||
TF family | Paired-related HD factors {3.1.3} | ||||||||
TF subfamily | OTX {3.1.3.17} | ||||||||
MGI | MGI:1194883 | ||||||||
EntrezGene | GeneID:12951 (SSTAR profile) | ||||||||
UniProt ID | CRX_MOUSE | ||||||||
UniProt AC | O54751 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Crx expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 62.0 | 17.0 | 46.0 | 13.0 | 38.0 | 28.0 | 10.0 | 16.0 | 30.0 | 18.0 | 32.0 | 11.0 | 102.0 | 23.0 | 40.0 | 14.0 |
02 | 160.0 | 8.0 | 57.0 | 7.0 | 36.0 | 11.0 | 6.0 | 33.0 | 62.0 | 18.0 | 28.0 | 20.0 | 15.0 | 15.0 | 20.0 | 4.0 |
03 | 50.0 | 15.0 | 162.0 | 46.0 | 25.0 | 8.0 | 4.0 | 15.0 | 40.0 | 15.0 | 47.0 | 9.0 | 7.0 | 11.0 | 44.0 | 2.0 |
04 | 22.0 | 14.0 | 74.0 | 12.0 | 26.0 | 13.0 | 6.0 | 4.0 | 123.0 | 53.0 | 66.0 | 15.0 | 19.0 | 18.0 | 29.0 | 6.0 |
05 | 27.0 | 1.0 | 161.0 | 1.0 | 45.0 | 7.0 | 45.0 | 1.0 | 63.0 | 6.0 | 104.0 | 2.0 | 3.0 | 0.0 | 34.0 | 0.0 |
06 | 0.0 | 0.0 | 138.0 | 0.0 | 1.0 | 0.0 | 12.0 | 1.0 | 5.0 | 4.0 | 335.0 | 0.0 | 0.0 | 0.0 | 4.0 | 0.0 |
07 | 6.0 | 0.0 | 0.0 | 0.0 | 4.0 | 0.0 | 0.0 | 0.0 | 401.0 | 87.0 | 1.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 1.0 | 0.0 | 411.0 | 0.0 | 0.0 | 0.0 | 87.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
09 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 10.0 | 12.0 | 1.0 | 476.0 |
10 | 10.0 | 0.0 | 0.0 | 0.0 | 12.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 444.0 | 3.0 | 10.0 | 20.0 |
11 | 127.0 | 53.0 | 197.0 | 90.0 | 3.0 | 0.0 | 0.0 | 0.0 | 5.0 | 2.0 | 0.0 | 3.0 | 6.0 | 3.0 | 11.0 | 0.0 |
12 | 42.0 | 22.0 | 64.0 | 13.0 | 27.0 | 14.0 | 5.0 | 12.0 | 42.0 | 79.0 | 52.0 | 35.0 | 24.0 | 38.0 | 24.0 | 7.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.679 | -0.599 | 0.383 | -0.86 | 0.193 | -0.108 | -1.114 | -0.658 | -0.04 | -0.543 | 0.023 | -1.022 | 1.174 | -0.302 | 0.244 | -0.788 |
02 | 1.623 | -1.328 | 0.595 | -1.454 | 0.14 | -1.022 | -1.6 | 0.054 | 0.679 | -0.543 | -0.108 | -0.439 | -0.721 | -0.721 | -0.439 | -1.975 |
03 | 0.465 | -0.721 | 1.636 | 0.383 | -0.22 | -1.328 | -1.975 | -0.721 | 0.244 | -0.721 | 0.404 | -1.215 | -1.454 | -1.022 | 0.339 | -2.584 |
04 | -0.346 | -0.788 | 0.855 | -0.938 | -0.181 | -0.86 | -1.6 | -1.975 | 1.361 | 0.523 | 0.741 | -0.721 | -0.49 | -0.543 | -0.074 | -1.6 |
05 | -0.144 | -3.126 | 1.629 | -3.126 | 0.361 | -1.454 | 0.361 | -3.126 | 0.695 | -1.6 | 1.194 | -2.584 | -2.234 | -4.4 | 0.083 | -4.4 |
06 | -4.4 | -4.4 | 1.476 | -4.4 | -3.126 | -4.4 | -0.938 | -3.126 | -1.77 | -1.975 | 2.361 | -4.4 | -4.4 | -4.4 | -1.975 | -4.4 |
07 | -1.6 | -4.4 | -4.4 | -4.4 | -1.975 | -4.4 | -4.4 | -4.4 | 2.541 | 1.016 | -3.126 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 |
08 | -4.4 | -3.126 | -4.4 | 2.565 | -4.4 | -4.4 | -4.4 | 1.016 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | -4.4 |
09 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | -4.4 | -1.114 | -0.938 | -3.126 | 2.712 |
10 | -1.114 | -4.4 | -4.4 | -4.4 | -0.938 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | 2.642 | -2.234 | -1.114 | -0.439 |
11 | 1.393 | 0.523 | 1.831 | 1.05 | -2.234 | -4.4 | -4.4 | -4.4 | -1.77 | -2.584 | -4.4 | -2.234 | -1.6 | -2.234 | -1.022 | -4.4 |
12 | 0.293 | -0.346 | 0.711 | -0.86 | -0.144 | -0.788 | -1.77 | -0.938 | 0.293 | 0.92 | 0.504 | 0.112 | -0.26 | 0.193 | -0.26 | -1.454 |