Model info
Transcription factorCrx
ModelCRX_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensushvRdvGGATTAdv
Best auROC (human)
Best auROC (mouse)0.93346949847898
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)8
Aligned words500
TF familyPaired-related HD factors{3.1.3}
TF subfamilyOTX{3.1.3.17}
MGI1194883
EntrezGene12951
UniProt IDCRX_MOUSE
UniProt ACO54751
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.28031
0.0005 6.12481
0.0001 7.81792
GTEx tissue expression atlas Crx expression
ReMap ChIP-seq dataset list Crx datasets
Motifs in JASPAR
PCM
ACGT
01124.082.076.0218.0
02267.052.0131.050.0
03287.023.0138.052.0
0486.046.0283.085.0
05249.082.0131.038.0
0696.03.0388.013.0
0716.05.0468.011.0
08382.0109.08.01.0
090.00.00.0500.0
1011.029.012.0448.0
11440.02.017.041.0
12135.033.0263.069.0
13117.0162.0172.049.0
PWM
ACGT
01-0.008-0.415-0.490.551
020.752-0.860.046-0.898
030.824-1.640.098-0.86
04-0.368-0.9790.81-0.38
050.683-0.4150.046-1.163
06-0.26-3.3251.124-2.163
07-1.975-2.9611.311-2.311
081.109-0.135-2.584-3.903
09-4.4-4.4-4.41.377
10-2.311-1.421-2.2341.268
111.25-3.573-1.92-1.09
120.076-1.2980.737-0.584
13-0.0650.2560.316-0.918