Transcription factor | Cux2 | ||||||||
Model | CUX2_MOUSE.H11DI.0.C | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 14 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | ddnhAATCAATvvh | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.876 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 5 | ||||||||
Aligned words | 608 | ||||||||
TF family | HD-CUT factors {3.1.9} | ||||||||
TF subfamily | CUX {3.1.9.2} | ||||||||
MGI | MGI:107321 | ||||||||
EntrezGene | GeneID:13048 (SSTAR profile) | ||||||||
UniProt ID | CUX2_MOUSE | ||||||||
UniProt AC | P70298 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Cux2 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 114.0 | 22.0 | 50.0 | 39.0 | 27.0 | 9.0 | 8.0 | 8.0 | 44.0 | 9.0 | 20.0 | 12.0 | 24.0 | 17.0 | 60.0 | 11.0 |
02 | 39.0 | 22.0 | 43.0 | 105.0 | 20.0 | 15.0 | 12.0 | 10.0 | 73.0 | 12.0 | 26.0 | 27.0 | 20.0 | 19.0 | 17.0 | 14.0 |
03 | 92.0 | 20.0 | 13.0 | 27.0 | 33.0 | 13.0 | 5.0 | 17.0 | 44.0 | 20.0 | 16.0 | 18.0 | 44.0 | 84.0 | 10.0 | 18.0 |
04 | 171.0 | 3.0 | 35.0 | 4.0 | 120.0 | 5.0 | 12.0 | 0.0 | 17.0 | 0.0 | 25.0 | 2.0 | 59.0 | 2.0 | 18.0 | 1.0 |
05 | 352.0 | 0.0 | 7.0 | 8.0 | 10.0 | 0.0 | 0.0 | 0.0 | 87.0 | 0.0 | 2.0 | 1.0 | 6.0 | 0.0 | 1.0 | 0.0 |
06 | 9.0 | 5.0 | 3.0 | 438.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 10.0 | 1.0 | 0.0 | 0.0 | 8.0 |
07 | 2.0 | 8.0 | 0.0 | 0.0 | 2.0 | 2.0 | 0.0 | 1.0 | 0.0 | 3.0 | 0.0 | 0.0 | 5.0 | 450.0 | 1.0 | 0.0 |
08 | 8.0 | 0.0 | 0.0 | 1.0 | 416.0 | 5.0 | 35.0 | 7.0 | 1.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
09 | 368.0 | 48.0 | 1.0 | 9.0 | 3.0 | 1.0 | 0.0 | 1.0 | 33.0 | 1.0 | 0.0 | 1.0 | 8.0 | 0.0 | 0.0 | 0.0 |
10 | 10.0 | 6.0 | 5.0 | 391.0 | 2.0 | 0.0 | 22.0 | 26.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 4.0 | 7.0 |
11 | 1.0 | 7.0 | 3.0 | 2.0 | 4.0 | 1.0 | 0.0 | 1.0 | 3.0 | 0.0 | 27.0 | 1.0 | 196.0 | 101.0 | 101.0 | 26.0 |
12 | 107.0 | 25.0 | 44.0 | 28.0 | 78.0 | 18.0 | 2.0 | 11.0 | 74.0 | 22.0 | 20.0 | 15.0 | 8.0 | 8.0 | 6.0 | 8.0 |
13 | 149.0 | 37.0 | 42.0 | 39.0 | 29.0 | 17.0 | 5.0 | 22.0 | 23.0 | 18.0 | 14.0 | 17.0 | 12.0 | 10.0 | 15.0 | 25.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 1.338 | -0.293 | 0.518 | 0.272 | -0.092 | -1.162 | -1.275 | -1.275 | 0.391 | -1.162 | -0.387 | -0.885 | -0.208 | -0.546 | 0.699 | -0.969 |
02 | 0.272 | -0.293 | 0.369 | 1.256 | -0.387 | -0.668 | -0.885 | -1.061 | 0.894 | -0.885 | -0.129 | -0.092 | -0.387 | -0.437 | -0.546 | -0.735 |
03 | 1.124 | -0.387 | -0.807 | -0.092 | 0.107 | -0.807 | -1.718 | -0.546 | 0.391 | -0.387 | -0.605 | -0.49 | 0.391 | 1.034 | -1.061 | -0.49 |
04 | 1.742 | -2.182 | 0.165 | -1.923 | 1.389 | -1.718 | -0.885 | -4.356 | -0.546 | -4.356 | -0.167 | -2.532 | 0.683 | -2.532 | -0.49 | -3.076 |
05 | 2.463 | -4.356 | -1.402 | -1.275 | -1.061 | -4.356 | -4.356 | -4.356 | 1.069 | -4.356 | -2.532 | -3.076 | -1.548 | -4.356 | -3.076 | -4.356 |
06 | -1.162 | -1.718 | -2.182 | 2.682 | -4.356 | -4.356 | -4.356 | -4.356 | -4.356 | -4.356 | -4.356 | -1.061 | -3.076 | -4.356 | -4.356 | -1.275 |
07 | -2.532 | -1.275 | -4.356 | -4.356 | -2.532 | -2.532 | -4.356 | -3.076 | -4.356 | -2.182 | -4.356 | -4.356 | -1.718 | 2.709 | -3.076 | -4.356 |
08 | -1.275 | -4.356 | -4.356 | -3.076 | 2.63 | -1.718 | 0.165 | -1.402 | -3.076 | -4.356 | -4.356 | -4.356 | -3.076 | -4.356 | -4.356 | -4.356 |
09 | 2.508 | 0.478 | -3.076 | -1.162 | -2.182 | -3.076 | -4.356 | -3.076 | 0.107 | -3.076 | -4.356 | -3.076 | -1.275 | -4.356 | -4.356 | -4.356 |
10 | -1.061 | -1.548 | -1.718 | 2.568 | -2.532 | -4.356 | -0.293 | -0.129 | -3.076 | -4.356 | -4.356 | -4.356 | -4.356 | -4.356 | -1.923 | -1.402 |
11 | -3.076 | -1.402 | -2.182 | -2.532 | -1.923 | -3.076 | -4.356 | -3.076 | -2.182 | -4.356 | -0.092 | -3.076 | 1.879 | 1.217 | 1.217 | -0.129 |
12 | 1.275 | -0.167 | 0.391 | -0.056 | 0.96 | -0.49 | -2.532 | -0.969 | 0.908 | -0.293 | -0.387 | -0.668 | -1.275 | -1.275 | -1.548 | -1.275 |
13 | 1.605 | 0.22 | 0.345 | 0.272 | -0.021 | -0.546 | -1.718 | -0.293 | -0.249 | -0.49 | -0.735 | -0.546 | -0.885 | -1.061 | -0.668 | -0.167 |