Model info
Transcription factorDmrt1
ModelDMRT1_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
C
Motif rank
0
ConsensushdGhhACAAWGTWdChv
Best auROC (human)0.551961828185557
Best auROC (mouse)0.9865777172939683
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)4
Aligned words500
TF familyDMRT{2.5.1}
TF subfamilyDMRT1{2.5.1.0.1}
MGI1354733
EntrezGene50796
UniProt IDDMRT1_MOUSE
UniProt ACQ9QZ59
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.02996
0.0005 5.14981
0.0001 7.501660000000001
GTEx tissue expression atlas Dmrt1 expression
Motifs in JASPAR
PCM
ACGT
01102.0116.059.0223.0
02156.021.0136.0187.0
0331.023.0432.014.0
04194.0168.023.0115.0
05180.051.037.0232.0
06479.07.05.09.0
0720.0467.05.08.0
08439.03.01.057.0
09381.0119.00.00.0
10162.03.08.0327.0
115.010.0484.01.0
1215.02.04.0479.0
13250.021.056.0173.0
14130.013.0200.0157.0
156.0458.013.023.0
16233.0119.017.0131.0
17239.087.097.077.0
PWM
ACGT
01-0.201-0.074-0.7370.573
020.219-1.7250.0830.399
03-1.358-1.641.231-2.096
040.4350.293-1.64-0.082
050.361-0.879-1.1890.613
061.334-2.694-2.961-2.484
07-1.771.309-2.961-2.584
081.247-3.325-3.903-0.771
091.106-0.049-4.4-4.4
100.256-3.325-2.5840.954
11-2.961-2.3941.345-3.903
12-2.034-3.573-3.1261.334
130.687-1.725-0.7880.322
140.039-2.1630.4650.225
15-2.8191.29-2.163-1.64
160.617-0.049-1.920.046
170.642-0.357-0.25-0.477