Model info
Transcription factorEgr1
ModelEGR1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusvbGYGKGGGYGGdd
Best auROC (human)0.987928043675523
Best auROC (mouse)0.9854317076234573
Peak sets in benchmark (human)36
Peak sets in benchmark (mouse)12
Aligned words492
TF familyThree-zinc finger Kr├╝ppel-related factors{2.3.1}
TF subfamilyEGR factors{2.3.1.3}
MGI95295
EntrezGene13653
UniProt IDEGR1_MOUSE
UniProt ACP08046
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 0.95661
0.0005 2.25781
0.0001 4.94681
GTEx tissue expression atlas Egr1 expression
ReMap ChIP-seq dataset list Egr1 datasets
Motifs in JASPAR
PCM
ACGT
01112.095.0232.053.0
0267.085.0167.0173.0
0325.019.0441.07.0
0476.0330.06.080.0
051.00.0486.05.0
062.01.0268.0221.0
0717.01.0474.00.0
080.02.0487.03.0
090.00.0492.00.0
1073.0301.00.0118.0
110.03.0487.02.0
1212.014.0383.083.0
13129.042.0270.051.0
14108.048.0284.052.0
PWM
ACGT
01-0.092-0.2550.629-0.826
02-0.597-0.3640.3030.338
03-1.546-1.8021.268-2.679
04-0.4740.979-2.803-0.423
05-3.889-4.3871.365-2.945
06-3.558-3.8890.7720.58
07-1.904-3.8891.34-4.387
08-4.387-3.5581.367-3.31
09-4.387-4.3871.377-4.387
10-0.5130.888-4.387-0.041
11-4.387-3.311.367-3.558
12-2.218-2.0811.127-0.387
130.047-1.0510.779-0.863
14-0.128-0.9220.83-0.844