Model info
Transcription factorEgr1
ModelEGR1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusvbGYGKGGGYGGdd
Best auROC (human)0.987928043675523
Best auROC (mouse)0.9854317076234573
Peak sets in benchmark (human)36
Peak sets in benchmark (mouse)12
Aligned words492
TF familyThree-zinc finger Kr├╝ppel-related factors{2.3.1}
TF subfamilyEGR factors{2.3.1.3}
MGI95295
EntrezGene13653
UniProt IDEGR1_MOUSE
UniProt ACP08046
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 0.95661
0.0005 2.25781
0.0001 4.94681
GTEx tissue expression atlas Egr1 expression
Motifs in JASPAR
PCM
ACGT
01112.095.0232.053.0
0267.085.0167.0173.0
0325.019.0441.07.0
0476.0330.06.080.0
051.00.0486.05.0
062.01.0268.0221.0
0717.01.0474.00.0
080.02.0487.03.0
090.00.0492.00.0
1073.0301.00.0118.0
110.03.0487.02.0
1212.014.0383.083.0
13129.042.0270.051.0
14108.048.0284.052.0
PWM
ACGT
01-0.092-0.2550.629-0.826
02-0.597-0.3640.3030.338
03-1.546-1.8021.268-2.679
04-0.4740.979-2.803-0.423
05-3.889-4.3871.365-2.945
06-3.558-3.8890.7720.58
07-1.904-3.8891.34-4.387
08-4.387-3.5581.367-3.31
09-4.387-4.3871.377-4.387
10-0.5130.888-4.387-0.041
11-4.387-3.311.367-3.558
12-2.218-2.0811.127-0.387
130.047-1.0510.779-0.863
14-0.128-0.9220.83-0.844