Model info
| Transcription factor | EGR4 (GeneCards) | ||||||||
| Model | EGR4_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | GGSGGYAGGGM | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 6 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors {2.3.1} | ||||||||
| TF subfamily | EGR factors {2.3.1.3} | ||||||||
| HGNC | HGNC:3241 | ||||||||
| EntrezGene | GeneID:1961 (SSTAR profile) | ||||||||
| UniProt ID | EGR4_HUMAN | ||||||||
| UniProt AC | Q05215 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | EGR4 expression | ||||||||
| ReMap ChIP-seq dataset list | EGR4 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.126 | 0.126 | 5.623 | 0.126 |
| 02 | 0.0 | 0.0 | 6.0 | 0.0 |
| 03 | 0.0 | 3.082 | 2.012 | 0.906 |
| 04 | 0.0 | 0.0 | 6.0 | 0.0 |
| 05 | 0.0 | 0.0 | 6.0 | 0.0 |
| 06 | 0.0 | 3.585 | 0.503 | 1.912 |
| 07 | 3.485 | 0.0 | 2.515 | 0.0 |
| 08 | 0.0 | 0.0 | 5.094 | 0.906 |
| 09 | 0.0 | 0.503 | 5.497 | 0.0 |
| 10 | 0.0 | 0.0 | 6.0 | 0.0 |
| 11 | 1.61 | 3.183 | 0.604 | 0.604 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.222 | -1.222 | 1.137 | -1.222 |
| 02 | -1.47 | -1.47 | 1.197 | -1.47 |
| 03 | -1.47 | 0.595 | 0.233 | -0.364 |
| 04 | -1.47 | -1.47 | 1.197 | -1.47 |
| 05 | -1.47 | -1.47 | 1.197 | -1.47 |
| 06 | -1.47 | 0.728 | -0.717 | 0.192 |
| 07 | 0.703 | -1.47 | 0.42 | -1.47 |
| 08 | -1.47 | -1.47 | 1.046 | -0.364 |
| 09 | -1.47 | -0.717 | 1.116 | -1.47 |
| 10 | -1.47 | -1.47 | 1.197 | -1.47 |
| 11 | 0.055 | 0.623 | -0.616 | -0.616 |