Model info
| Transcription factor | Esr2 | ||||||||
| Model | ESR2_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RGGbCRbCbYGhCCY | ||||||||
| Best auROC (human) | 0.944 | ||||||||
| Best auROC (mouse) | 0.941 | ||||||||
| Peak sets in benchmark (human) | 11 | ||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 497 | ||||||||
| TF family | Steroid hormone receptors (NR3) {2.1.1} | ||||||||
| TF subfamily | ER-like receptors (NR3A&B) {2.1.1.2} | ||||||||
| MGI | MGI:109392 | ||||||||
| EntrezGene | GeneID:13983 (SSTAR profile) | ||||||||
| UniProt ID | ESR2_MOUSE | ||||||||
| UniProt AC | O08537 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Esr2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 246.0 | 48.0 | 180.0 | 23.0 |
| 02 | 57.0 | 6.0 | 393.0 | 41.0 |
| 03 | 23.0 | 13.0 | 427.0 | 34.0 |
| 04 | 48.0 | 58.0 | 114.0 | 277.0 |
| 05 | 8.0 | 397.0 | 26.0 | 66.0 |
| 06 | 309.0 | 17.0 | 123.0 | 48.0 |
| 07 | 46.0 | 254.0 | 132.0 | 65.0 |
| 08 | 0.0 | 332.0 | 0.0 | 165.0 |
| 09 | 61.0 | 210.0 | 133.0 | 93.0 |
| 10 | 20.0 | 119.0 | 15.0 | 343.0 |
| 11 | 41.0 | 13.0 | 443.0 | 0.0 |
| 12 | 259.0 | 136.0 | 43.0 | 59.0 |
| 13 | 12.0 | 420.0 | 11.0 | 54.0 |
| 14 | 41.0 | 421.0 | 6.0 | 29.0 |
| 15 | 36.0 | 177.0 | 18.0 | 266.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.677 | -0.932 | 0.367 | -1.634 |
| 02 | -0.765 | -2.813 | 1.143 | -1.084 |
| 03 | -1.634 | -2.157 | 1.226 | -1.264 |
| 04 | -0.932 | -0.748 | -0.085 | 0.795 |
| 05 | -2.578 | 1.153 | -1.519 | -0.622 |
| 06 | 0.904 | -1.914 | -0.01 | -0.932 |
| 07 | -0.973 | 0.709 | 0.06 | -0.637 |
| 08 | -4.395 | 0.975 | -4.395 | 0.281 |
| 09 | -0.699 | 0.52 | 0.067 | -0.286 |
| 10 | -1.764 | -0.043 | -2.028 | 1.008 |
| 11 | -1.084 | -2.157 | 1.262 | -4.395 |
| 12 | 0.728 | 0.089 | -1.038 | -0.731 |
| 13 | -2.228 | 1.209 | -2.305 | -0.817 |
| 14 | -1.084 | 1.212 | -2.813 | -1.415 |
| 15 | -1.209 | 0.35 | -1.862 | 0.755 |