Transcription factor | Foxa2 | ||||||||
Model | FOXA2_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 16 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nbnhTGTTTACWYWdn | ||||||||
Best auROC (human) | 0.985 | ||||||||
Best auROC (mouse) | 0.994 | ||||||||
Peak sets in benchmark (human) | 22 | ||||||||
Peak sets in benchmark (mouse) | 34 | ||||||||
Aligned words | 501 | ||||||||
TF family | Forkhead box (FOX) factors {3.3.1} | ||||||||
TF subfamily | FOXA {3.3.1.1} | ||||||||
MGI | MGI:1347476 | ||||||||
EntrezGene | GeneID:15376 (SSTAR profile) | ||||||||
UniProt ID | FOXA2_MOUSE | ||||||||
UniProt AC | P35583 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Foxa2 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 15.0 | 27.0 | 23.0 | 16.0 | 19.0 | 59.0 | 4.0 | 38.0 | 15.0 | 63.0 | 18.0 | 30.0 | 13.0 | 95.0 | 31.0 | 32.0 |
02 | 5.0 | 20.0 | 37.0 | 0.0 | 79.0 | 70.0 | 7.0 | 88.0 | 7.0 | 36.0 | 21.0 | 12.0 | 3.0 | 65.0 | 36.0 | 12.0 |
03 | 40.0 | 22.0 | 21.0 | 11.0 | 51.0 | 31.0 | 8.0 | 101.0 | 23.0 | 23.0 | 17.0 | 38.0 | 6.0 | 22.0 | 29.0 | 55.0 |
04 | 0.0 | 1.0 | 1.0 | 118.0 | 0.0 | 0.0 | 0.0 | 98.0 | 1.0 | 0.0 | 0.0 | 74.0 | 0.0 | 0.0 | 1.0 | 204.0 |
05 | 1.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 145.0 | 0.0 | 349.0 | 0.0 |
06 | 0.0 | 0.0 | 0.0 | 147.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 350.0 | 0.0 | 0.0 | 0.0 | 0.0 |
07 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 22.0 | 475.0 |
08 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 20.0 | 0.0 | 0.0 | 135.0 | 341.0 |
09 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 136.0 | 0.0 | 1.0 | 0.0 | 315.0 | 0.0 | 45.0 | 1.0 |
10 | 5.0 | 403.0 | 3.0 | 40.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 28.0 | 0.0 | 16.0 | 0.0 | 1.0 | 0.0 | 0.0 |
11 | 4.0 | 1.0 | 0.0 | 2.0 | 186.0 | 40.0 | 1.0 | 205.0 | 1.0 | 1.0 | 0.0 | 1.0 | 8.0 | 3.0 | 0.0 | 45.0 |
12 | 22.0 | 82.0 | 29.0 | 66.0 | 5.0 | 14.0 | 0.0 | 26.0 | 0.0 | 0.0 | 0.0 | 1.0 | 4.0 | 69.0 | 13.0 | 167.0 |
13 | 19.0 | 0.0 | 3.0 | 9.0 | 98.0 | 1.0 | 0.0 | 66.0 | 29.0 | 0.0 | 0.0 | 13.0 | 95.0 | 4.0 | 16.0 | 145.0 |
14 | 71.0 | 20.0 | 121.0 | 29.0 | 2.0 | 0.0 | 1.0 | 2.0 | 3.0 | 1.0 | 9.0 | 6.0 | 22.0 | 25.0 | 137.0 | 49.0 |
15 | 23.0 | 22.0 | 31.0 | 22.0 | 7.0 | 12.0 | 2.0 | 25.0 | 49.0 | 57.0 | 98.0 | 64.0 | 12.0 | 38.0 | 22.0 | 14.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.717 | -0.14 | -0.298 | -0.654 | -0.486 | 0.634 | -1.971 | 0.197 | -0.717 | 0.699 | -0.539 | -0.036 | -0.856 | 1.108 | -0.004 | 0.027 |
02 | -1.766 | -0.435 | 0.171 | -4.397 | 0.924 | 0.804 | -1.451 | 1.031 | -1.451 | 0.144 | -0.388 | -0.934 | -2.23 | 0.73 | 0.144 | -0.934 |
03 | 0.248 | -0.342 | -0.388 | -1.018 | 0.489 | -0.004 | -1.324 | 1.169 | -0.298 | -0.298 | -0.595 | 0.197 | -1.596 | -0.342 | -0.07 | 0.564 |
04 | -4.397 | -3.122 | -3.122 | 1.324 | -4.397 | -4.397 | -4.397 | 1.139 | -3.122 | -4.397 | -4.397 | 0.859 | -4.397 | -4.397 | -3.122 | 1.87 |
05 | -3.122 | -4.397 | -4.397 | -4.397 | -3.122 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -2.58 | -4.397 | 1.529 | -4.397 | 2.406 | -4.397 |
06 | -4.397 | -4.397 | -4.397 | 1.543 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -3.122 | 2.409 | -4.397 | -4.397 | -4.397 | -4.397 |
07 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -3.122 | -4.397 | -4.397 | -0.342 | 2.714 |
08 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -2.58 | -0.435 | -4.397 | -4.397 | 1.458 | 2.383 |
09 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | -4.397 | 1.465 | -4.397 | -3.122 | -4.397 | 2.303 | -4.397 | 0.365 | -3.122 |
10 | -1.766 | 2.549 | -2.23 | 0.248 | -4.397 | -4.397 | -4.397 | -4.397 | -2.58 | -0.104 | -4.397 | -0.654 | -4.397 | -3.122 | -4.397 | -4.397 |
11 | -1.971 | -3.122 | -4.397 | -2.58 | 1.777 | 0.248 | -3.122 | 1.874 | -3.122 | -3.122 | -4.397 | -3.122 | -1.324 | -2.23 | -4.397 | 0.365 |
12 | -0.342 | 0.961 | -0.07 | 0.745 | -1.766 | -0.784 | -4.397 | -0.177 | -4.397 | -4.397 | -4.397 | -3.122 | -1.971 | 0.789 | -0.856 | 1.67 |
13 | -0.486 | -4.397 | -2.23 | -1.211 | 1.139 | -3.122 | -4.397 | 0.745 | -0.07 | -4.397 | -4.397 | -0.856 | 1.108 | -1.971 | -0.654 | 1.529 |
14 | 0.818 | -0.435 | 1.349 | -0.07 | -2.58 | -4.397 | -3.122 | -2.58 | -2.23 | -3.122 | -1.211 | -1.596 | -0.342 | -0.216 | 1.472 | 0.449 |
15 | -0.298 | -0.342 | -0.004 | -0.342 | -1.451 | -0.934 | -2.58 | -0.216 | 0.449 | 0.599 | 1.139 | 0.715 | -0.934 | 0.197 | -0.342 | -0.784 |