Model info
Transcription factorFoxc1
ModelFOXC1_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
C
Motif rank
0
ConsensusbnhTGTTTACWTAvS
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words26
TF familyForkhead box (FOX) factors{3.3.1}
TF subfamilyFOXC{3.3.1.3}
MGI1347466
EntrezGene17300
UniProt IDFOXC1_MOUSE
UniProt ACQ61572
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.92476
0.0005 5.839510000000001
0.0001 7.754815000000001
GTEx tissue expression atlas Foxc1 expression
Motifs in JASPAR
PCM
ACGT
013.512.54.55.5
029.02.09.06.0
037.04.02.013.0
040.00.00.026.0
050.00.026.00.0
061.00.00.025.0
071.00.00.025.0
080.00.01.025.0
0925.00.00.01.0
100.019.00.07.0
116.03.00.017.0
120.05.00.021.0
1317.00.00.09.0
1412.05.07.02.0
151.07.015.03.0
PWM
ACGT
01-0.5280.599-0.319-0.147
020.294-0.9550.294-0.071
030.066-0.418-0.9550.636
04-2.195-2.195-2.1951.299
05-2.195-2.1951.299-2.195
06-1.394-2.195-2.1951.261
07-1.394-2.195-2.1951.261
08-2.195-2.195-1.3941.261
091.261-2.195-2.195-1.394
10-2.1950.997-2.1950.066
11-0.071-0.651-2.1950.89
12-2.195-0.23-2.1951.093
130.89-2.195-2.1950.294
140.561-0.230.066-0.955
15-1.3940.0660.771-0.651