Model info
Transcription factorFoxc2
ModelFOXC2_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
D
Motif rank
0
ConsensusKhTTGTTdTGYCAGd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words5
TF familyForkhead box (FOX) factors{3.3.1}
TF subfamilyFOXC{3.3.1.3}
MGI1347481
EntrezGene14234
UniProt IDFOXC2_MOUSE
UniProt ACQ61850
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.52854
0.0005 6.27663
0.0001 7.81424
GTEx tissue expression atlas Foxc2 expression
ReMap ChIP-seq dataset list Foxc2 datasets
Motifs in JASPAR
PCM
ACGT
010.2680.2683.1251.339
021.0711.0710.02.857
030.01.0710.03.929
040.00.00.05.0
051.0710.03.9290.0
060.00.00.05.0
070.00.00.05.0
081.0710.01.0712.857
091.7860.00.03.214
100.01.7863.2140.0
111.0712.1430.01.786
120.03.2140.01.786
135.00.00.00.0
140.00.7144.2860.0
152.4110.2681.3390.982
PWM
ACGT
01-0.902-0.9020.7580.053
02-0.114-0.114-1.4130.679
03-1.413-0.114-1.4130.964
04-1.413-1.413-1.4131.185
05-0.114-1.4130.964-1.413
06-1.413-1.413-1.4131.185
07-1.413-1.413-1.4131.185
08-0.114-1.413-0.1140.679
090.281-1.413-1.4130.783
10-1.4130.2810.783-1.413
11-0.1140.432-1.4130.281
12-1.4130.783-1.4130.281
131.185-1.413-1.413-1.413
14-1.413-0.3921.043-1.413
150.532-0.9020.053-0.177