Model info
Transcription factorFoxc2
ModelFOXC2_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
D
Motif rank
0
ConsensusKhTTGTTdTGYCAGd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words5
TF familyForkhead box (FOX) factors{3.3.1}
TF subfamilyFOXC{3.3.1.3}
MGI1347481
EntrezGene14234
UniProt IDFOXC2_MOUSE
UniProt ACQ61850
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.532109999999999
0.0005 6.27086
0.0001 7.814820000000001
GTEx tissue expression atlas Foxc2 expression
Motifs in JASPAR
PCM
ACGT
010.2680.2683.1251.339
021.0711.0710.02.857
030.01.0710.03.929
040.00.00.05.0
051.0710.03.9290.0
060.00.00.05.0
070.00.00.05.0
081.0710.01.0712.857
091.7860.00.03.214
100.01.7863.2140.0
111.0712.1430.01.786
120.03.2140.01.786
135.00.00.00.0
140.00.7144.2860.0
152.4110.2681.3390.982
PWM
ACGT
01-0.902-0.9020.7580.053
02-0.114-0.114-1.4130.679
03-1.413-0.114-1.4130.964
04-1.413-1.413-1.4131.185
05-0.114-1.4130.964-1.413
06-1.413-1.413-1.4131.185
07-1.413-1.413-1.4131.185
08-0.114-1.413-0.1140.679
090.281-1.413-1.4130.783
10-1.4130.2810.783-1.413
11-0.1140.432-1.4130.281
12-1.4130.783-1.4130.281
131.185-1.413-1.413-1.413
14-1.413-0.3921.043-1.413
150.532-0.9020.053-0.177