Model info
Transcription factorGATA1
ModelGATA1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusbbKbnnnnnnvWGATAAvv
Best auROC (human)0.9807675961439153
Best auROC (mouse)0.9426629174449124
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)122
Aligned words500
TF familyGATA-type zinc fingers{2.2.1}
TF subfamilyTwo zinc-finger GATA factors{2.2.1.1}
HGNC4170
EntrezGene2623
UniProt IDGATA1_HUMAN
UniProt ACP15976
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.67901
0.0005 5.73141
0.0001 7.75631
PCM
ACGT
0196.0202.0103.099.0
0258.072.095.0275.0
0328.039.0320.0113.0
0459.0103.0195.0143.0
0597.0157.0141.0105.0
06134.0123.0139.0104.0
07112.0105.0184.099.0
08131.084.0170.0115.0
09107.0112.0157.0124.0
10166.094.0162.078.0
1192.0194.0161.053.0
12360.010.04.0126.0
133.00.0497.00.0
14498.00.00.02.0
151.00.06.0493.0
16473.02.07.018.0
17429.08.045.018.0
18107.077.0277.039.0
19176.094.0173.057.0
PWM
ACGT
01-0.260.475-0.191-0.23
02-0.754-0.543-0.2710.782
03-1.454-1.1380.932-0.1
04-0.737-0.1910.440.133
05-0.250.2250.119-0.172
060.069-0.0160.105-0.181
07-0.108-0.1720.383-0.23
080.046-0.3920.304-0.082
09-0.153-0.1080.225-0.008
100.281-0.2810.256-0.464
11-0.3020.4350.25-0.841
121.05-2.394-3.1260.008
13-3.325-4.41.371-4.4
141.373-4.4-4.4-3.573
15-3.903-4.4-2.8191.363
161.322-3.573-2.694-1.868
171.224-2.584-1.0-1.868
18-0.153-0.4770.789-1.138
190.339-0.2810.322-0.771