Model info
Transcription factorGATA1
ModelGATA1_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusdvWGATAASvv
Best auROC (human)0.9831712158947676
Best auROC (mouse)0.9457197639103337
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)122
Aligned words500
TF familyGATA-type zinc fingers{2.2.1}
TF subfamilyTwo zinc-finger GATA factors{2.2.1.1}
HGNC4170
EntrezGene2623
UniProt IDGATA1_HUMAN
UniProt ACP15976
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.68528
0.0005 5.93782
0.0001 8.11529
GTEx tissue expression atlas GATA1 expression
ReMap ChIP-seq dataset list GATA1 datasets
Motifs in JASPAR
PCM
ACGT
01173.058.0152.0117.0
0276.0221.0153.050.0
03350.07.04.0139.0
040.00.0499.01.0
05500.00.00.00.0
063.04.00.0493.0
07485.04.03.08.0
08461.02.029.08.0
0970.087.0332.011.0
10186.0100.0170.044.0
11170.0108.0161.061.0
PWM
ACGT
010.322-0.7540.193-0.065
02-0.490.5650.2-0.898
031.022-2.694-3.1260.105
04-4.4-4.41.375-3.903
051.377-4.4-4.4-4.4
06-3.325-3.126-4.41.363
071.347-3.126-3.325-2.584
081.296-3.573-1.421-2.584
09-0.57-0.3570.969-2.311
100.393-0.220.304-1.022
110.304-0.1440.25-0.705