Transcription factor | Gata1 | ||||||||
Model | GATA1_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 20 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nbbbnnnnndvWGATAAvvn | ||||||||
Best auROC (human) | 0.983 | ||||||||
Best auROC (mouse) | 0.971 | ||||||||
Peak sets in benchmark (human) | 48 | ||||||||
Peak sets in benchmark (mouse) | 122 | ||||||||
Aligned words | 505 | ||||||||
TF family | GATA-type zinc fingers {2.2.1} | ||||||||
TF subfamily | Two zinc-finger GATA factors {2.2.1.1} | ||||||||
MGI | MGI:95661 | ||||||||
EntrezGene | GeneID:14460 (SSTAR profile) | ||||||||
UniProt ID | GATA1_MOUSE | ||||||||
UniProt AC | P17679 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Gata1 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 13.0 | 18.0 | 28.0 | 24.0 | 19.0 | 44.0 | 6.0 | 113.0 | 12.0 | 49.0 | 26.0 | 47.0 | 4.0 | 24.0 | 62.0 | 11.0 |
02 | 7.0 | 6.0 | 32.0 | 3.0 | 23.0 | 24.0 | 5.0 | 83.0 | 17.0 | 30.0 | 31.0 | 44.0 | 4.0 | 13.0 | 162.0 | 16.0 |
03 | 2.0 | 7.0 | 34.0 | 8.0 | 20.0 | 14.0 | 10.0 | 29.0 | 19.0 | 64.0 | 89.0 | 58.0 | 4.0 | 27.0 | 101.0 | 14.0 |
04 | 6.0 | 11.0 | 23.0 | 5.0 | 41.0 | 21.0 | 6.0 | 44.0 | 32.0 | 69.0 | 78.0 | 55.0 | 6.0 | 18.0 | 72.0 | 13.0 |
05 | 13.0 | 24.0 | 35.0 | 13.0 | 32.0 | 45.0 | 13.0 | 29.0 | 33.0 | 51.0 | 65.0 | 30.0 | 7.0 | 22.0 | 61.0 | 27.0 |
06 | 14.0 | 18.0 | 40.0 | 13.0 | 41.0 | 40.0 | 17.0 | 44.0 | 36.0 | 43.0 | 64.0 | 31.0 | 11.0 | 29.0 | 38.0 | 21.0 |
07 | 18.0 | 22.0 | 48.0 | 14.0 | 35.0 | 41.0 | 13.0 | 41.0 | 30.0 | 43.0 | 66.0 | 20.0 | 4.0 | 29.0 | 57.0 | 19.0 |
08 | 24.0 | 18.0 | 31.0 | 14.0 | 30.0 | 44.0 | 17.0 | 44.0 | 36.0 | 48.0 | 66.0 | 34.0 | 8.0 | 27.0 | 41.0 | 18.0 |
09 | 22.0 | 12.0 | 61.0 | 3.0 | 65.0 | 24.0 | 9.0 | 39.0 | 38.0 | 23.0 | 71.0 | 23.0 | 25.0 | 8.0 | 60.0 | 17.0 |
10 | 15.0 | 60.0 | 63.0 | 12.0 | 11.0 | 41.0 | 8.0 | 7.0 | 40.0 | 83.0 | 64.0 | 14.0 | 11.0 | 25.0 | 40.0 | 6.0 |
11 | 56.0 | 2.0 | 0.0 | 19.0 | 113.0 | 4.0 | 0.0 | 92.0 | 115.0 | 9.0 | 4.0 | 47.0 | 31.0 | 1.0 | 0.0 | 7.0 |
12 | 0.0 | 0.0 | 314.0 | 1.0 | 0.0 | 0.0 | 16.0 | 0.0 | 0.0 | 0.0 | 4.0 | 0.0 | 0.0 | 0.0 | 165.0 | 0.0 |
13 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 497.0 | 2.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
14 | 0.0 | 1.0 | 1.0 | 496.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
15 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 470.0 | 0.0 | 2.0 | 26.0 |
16 | 388.0 | 8.0 | 58.0 | 18.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 1.0 | 26.0 | 0.0 | 0.0 | 0.0 |
17 | 69.0 | 67.0 | 245.0 | 34.0 | 0.0 | 3.0 | 4.0 | 1.0 | 10.0 | 12.0 | 28.0 | 8.0 | 1.0 | 3.0 | 15.0 | 0.0 |
18 | 19.0 | 23.0 | 29.0 | 9.0 | 47.0 | 16.0 | 11.0 | 11.0 | 75.0 | 78.0 | 123.0 | 16.0 | 8.0 | 5.0 | 28.0 | 2.0 |
19 | 41.0 | 35.0 | 53.0 | 20.0 | 48.0 | 34.0 | 11.0 | 29.0 | 56.0 | 44.0 | 62.0 | 29.0 | 12.0 | 12.0 | 9.0 | 5.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.86 | -0.543 | -0.108 | -0.26 | -0.49 | 0.339 | -1.6 | 1.276 | -0.938 | 0.445 | -0.181 | 0.404 | -1.975 | -0.26 | 0.679 | -1.022 |
02 | -1.454 | -1.6 | 0.023 | -2.234 | -0.302 | -0.26 | -1.77 | 0.969 | -0.599 | -0.04 | -0.008 | 0.339 | -1.975 | -0.86 | 1.636 | -0.658 |
03 | -2.584 | -1.454 | 0.083 | -1.328 | -0.439 | -0.788 | -1.114 | -0.074 | -0.49 | 0.711 | 1.039 | 0.613 | -1.975 | -0.144 | 1.165 | -0.788 |
04 | -1.6 | -1.022 | -0.302 | -1.77 | 0.269 | -0.392 | -1.6 | 0.339 | 0.023 | 0.785 | 0.907 | 0.56 | -1.6 | -0.543 | 0.828 | -0.86 |
05 | -0.86 | -0.26 | 0.112 | -0.86 | 0.023 | 0.361 | -0.86 | -0.074 | 0.054 | 0.485 | 0.726 | -0.04 | -1.454 | -0.346 | 0.663 | -0.144 |
06 | -0.788 | -0.543 | 0.244 | -0.86 | 0.269 | 0.244 | -0.599 | 0.339 | 0.14 | 0.316 | 0.711 | -0.008 | -1.022 | -0.074 | 0.193 | -0.392 |
07 | -0.543 | -0.346 | 0.425 | -0.788 | 0.112 | 0.269 | -0.86 | 0.269 | -0.04 | 0.316 | 0.741 | -0.439 | -1.975 | -0.074 | 0.595 | -0.49 |
08 | -0.26 | -0.543 | -0.008 | -0.788 | -0.04 | 0.339 | -0.599 | 0.339 | 0.14 | 0.425 | 0.741 | 0.083 | -1.328 | -0.144 | 0.269 | -0.543 |
09 | -0.346 | -0.938 | 0.663 | -2.234 | 0.726 | -0.26 | -1.215 | 0.219 | 0.193 | -0.302 | 0.814 | -0.302 | -0.22 | -1.328 | 0.646 | -0.599 |
10 | -0.721 | 0.646 | 0.695 | -0.938 | -1.022 | 0.269 | -1.328 | -1.454 | 0.244 | 0.969 | 0.711 | -0.788 | -1.022 | -0.22 | 0.244 | -1.6 |
11 | 0.578 | -2.584 | -4.4 | -0.49 | 1.276 | -1.975 | -4.4 | 1.072 | 1.294 | -1.215 | -1.975 | 0.404 | -0.008 | -3.126 | -4.4 | -1.454 |
12 | -4.4 | -4.4 | 2.296 | -3.126 | -4.4 | -4.4 | -0.658 | -4.4 | -4.4 | -4.4 | -1.975 | -4.4 | -4.4 | -4.4 | 1.654 | -4.4 |
13 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | 2.755 | -2.584 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 |
14 | -4.4 | -3.126 | -3.126 | 2.753 | -4.4 | -4.4 | -4.4 | -2.584 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 |
15 | -4.4 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | 2.699 | -4.4 | -2.584 | -0.181 |
16 | 2.508 | -1.328 | 0.613 | -0.543 | -4.4 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -3.126 | -0.181 | -4.4 | -4.4 | -4.4 |
17 | 0.785 | 0.756 | 2.048 | 0.083 | -4.4 | -2.234 | -1.975 | -3.126 | -1.114 | -0.938 | -0.108 | -1.328 | -3.126 | -2.234 | -0.721 | -4.4 |
18 | -0.49 | -0.302 | -0.074 | -1.215 | 0.404 | -0.658 | -1.022 | -1.022 | 0.868 | 0.907 | 1.361 | -0.658 | -1.328 | -1.77 | -0.108 | -2.584 |
19 | 0.269 | 0.112 | 0.523 | -0.439 | 0.425 | 0.083 | -1.022 | -0.074 | 0.578 | 0.339 | 0.679 | -0.074 | -0.938 | -0.938 | -1.215 | -1.77 |