Model info
Transcription factorGata1
ModelGATA1_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusnbbbnnnnndvWGATAAvvn
Best auROC (human)0.9829305678735967
Best auROC (mouse)0.9714257754519701
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)122
Aligned words505
TF familyGATA-type zinc fingers{2.2.1}
TF subfamilyTwo zinc-finger GATA factors{2.2.1.1}
MGI95661
EntrezGene14460
UniProt IDGATA1_MOUSE
UniProt ACP17679
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.61611
0.0005 11.04141
0.0001 15.20461
GTEx tissue expression atlas Gata1 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0113.018.028.024.019.044.06.0113.012.049.026.047.04.024.062.011.0
027.06.032.03.023.024.05.083.017.030.031.044.04.013.0162.016.0
032.07.034.08.020.014.010.029.019.064.089.058.04.027.0101.014.0
046.011.023.05.041.021.06.044.032.069.078.055.06.018.072.013.0
0513.024.035.013.032.045.013.029.033.051.065.030.07.022.061.027.0
0614.018.040.013.041.040.017.044.036.043.064.031.011.029.038.021.0
0718.022.048.014.035.041.013.041.030.043.066.020.04.029.057.019.0
0824.018.031.014.030.044.017.044.036.048.066.034.08.027.041.018.0
0922.012.061.03.065.024.09.039.038.023.071.023.025.08.060.017.0
1015.060.063.012.011.041.08.07.040.083.064.014.011.025.040.06.0
1156.02.00.019.0113.04.00.092.0115.09.04.047.031.01.00.07.0
120.00.0314.01.00.00.016.00.00.00.04.00.00.00.0165.00.0
130.00.00.00.00.00.00.00.0497.02.00.00.01.00.00.00.0
140.01.01.0496.00.00.00.02.00.00.00.00.00.00.00.00.0
150.00.00.00.01.00.00.00.01.00.00.00.0470.00.02.026.0
16388.08.058.018.00.00.00.00.01.00.00.01.026.00.00.00.0
1769.067.0245.034.00.03.04.01.010.012.028.08.01.03.015.00.0
1819.023.029.09.047.016.011.011.075.078.0123.016.08.05.028.02.0
1941.035.053.020.048.034.011.029.056.044.062.029.012.012.09.05.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.86-0.543-0.108-0.26-0.490.339-1.61.276-0.9380.445-0.1810.404-1.975-0.260.679-1.022
02-1.454-1.60.023-2.234-0.302-0.26-1.770.969-0.599-0.04-0.0080.339-1.975-0.861.636-0.658
03-2.584-1.4540.083-1.328-0.439-0.788-1.114-0.074-0.490.7111.0390.613-1.975-0.1441.165-0.788
04-1.6-1.022-0.302-1.770.269-0.392-1.60.3390.0230.7850.9070.56-1.6-0.5430.828-0.86
05-0.86-0.260.112-0.860.0230.361-0.86-0.0740.0540.4850.726-0.04-1.454-0.3460.663-0.144
06-0.788-0.5430.244-0.860.2690.244-0.5990.3390.140.3160.711-0.008-1.022-0.0740.193-0.392
07-0.543-0.3460.425-0.7880.1120.269-0.860.269-0.040.3160.741-0.439-1.975-0.0740.595-0.49
08-0.26-0.543-0.008-0.788-0.040.339-0.5990.3390.140.4250.7410.083-1.328-0.1440.269-0.543
09-0.346-0.9380.663-2.2340.726-0.26-1.2150.2190.193-0.3020.814-0.302-0.22-1.3280.646-0.599
10-0.7210.6460.695-0.938-1.0220.269-1.328-1.4540.2440.9690.711-0.788-1.022-0.220.244-1.6
110.578-2.584-4.4-0.491.276-1.975-4.41.0721.294-1.215-1.9750.404-0.008-3.126-4.4-1.454
12-4.4-4.42.296-3.126-4.4-4.4-0.658-4.4-4.4-4.4-1.975-4.4-4.4-4.41.654-4.4
13-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.755-2.584-4.4-4.4-3.126-4.4-4.4-4.4
14-4.4-3.126-3.1262.753-4.4-4.4-4.4-2.584-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
15-4.4-4.4-4.4-4.4-3.126-4.4-4.4-4.4-3.126-4.4-4.4-4.42.699-4.4-2.584-0.181
162.508-1.3280.613-0.543-4.4-4.4-4.4-4.4-3.126-4.4-4.4-3.126-0.181-4.4-4.4-4.4
170.7850.7562.0480.083-4.4-2.234-1.975-3.126-1.114-0.938-0.108-1.328-3.126-2.234-0.721-4.4
18-0.49-0.302-0.074-1.2150.404-0.658-1.022-1.0220.8680.9071.361-0.658-1.328-1.77-0.108-2.584
190.2690.1120.523-0.4390.4250.083-1.022-0.0740.5780.3390.679-0.074-0.938-0.938-1.215-1.77