Model info
Transcription factorGata1
ModelGATA1_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusdbAGATAASvv
Best auROC (human)0.972197108091878
Best auROC (mouse)0.9496300118353108
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)122
Aligned words500
TF familyGATA-type zinc fingers{2.2.1}
TF subfamilyTwo zinc-finger GATA factors{2.2.1.1}
MGI95661
EntrezGene14460
UniProt IDGATA1_MOUSE
UniProt ACP17679
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.83714
0.0005 6.1089
0.0001 8.00813
GTEx tissue expression atlas Gata1 expression
ReMap ChIP-seq dataset list Gata1 datasets
Motifs in JASPAR
PCM
ACGT
01149.075.0185.091.0
0265.0193.0173.069.0
03363.08.03.0126.0
040.00.0499.01.0
05497.01.00.02.0
060.05.03.0492.0
07489.02.00.09.0
08420.01.069.010.0
0970.093.0316.021.0
10179.0122.0171.028.0
11166.099.0168.067.0
PWM
ACGT
010.174-0.5030.388-0.313
02-0.6430.430.322-0.584
031.058-2.584-3.3250.008
04-4.4-4.41.375-3.903
051.371-3.903-4.4-3.573
06-4.4-2.961-3.3251.361
071.355-3.573-4.4-2.484
081.203-3.903-0.584-2.394
09-0.57-0.2910.92-1.725
100.355-0.0240.31-1.454
110.281-0.230.293-0.613