Model info
Transcription factorGata1
ModelGATA1_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusdbAGATAASvv
Best auROC (human)0.972197108091878
Best auROC (mouse)0.9496300118353108
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)122
Aligned words500
TF familyGATA-type zinc fingers{2.2.1}
TF subfamilyTwo zinc-finger GATA factors{2.2.1.1}
MGI95661
EntrezGene14460
UniProt IDGATA1_MOUSE
UniProt ACP17679
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.83714
0.0005 6.1089
0.0001 8.00813
GTEx tissue expression atlas Gata1 expression
Motifs in JASPAR
PCM
ACGT
01149.075.0185.091.0
0265.0193.0173.069.0
03363.08.03.0126.0
040.00.0499.01.0
05497.01.00.02.0
060.05.03.0492.0
07489.02.00.09.0
08420.01.069.010.0
0970.093.0316.021.0
10179.0122.0171.028.0
11166.099.0168.067.0
PWM
ACGT
010.174-0.5030.388-0.313
02-0.6430.430.322-0.584
031.058-2.584-3.3250.008
04-4.4-4.41.375-3.903
051.371-3.903-4.4-3.573
06-4.4-2.961-3.3251.361
071.355-3.573-4.4-2.484
081.203-3.903-0.584-2.394
09-0.57-0.2910.92-1.725
100.355-0.0240.31-1.454
110.281-0.230.293-0.613