Model info
Transcription factorGATA2
(GeneCards)
ModelGATA2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusbKKbnnnnndvAGATAASv
Best auROC (human)0.958
Best auROC (mouse)0.971
Peak sets in benchmark (human)84
Peak sets in benchmark (mouse)54
Aligned words500
TF familyGATA-type zinc fingers {2.2.1}
TF subfamilyTwo zinc-finger GATA factors {2.2.1.1}
HGNCHGNC:4171
EntrezGeneGeneID:2624
(SSTAR profile)
UniProt IDGATA2_HUMAN
UniProt ACP23769
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.63011
0.0005 5.67581
0.0001 7.775210000000001
GTEx tissue expression atlas GATA2 expression
ReMap ChIP-seq dataset list GATA2 datasets
Motifs in JASPAR
PCM
ACGT
0166.0226.0113.095.0
0262.052.079.0307.0
0340.025.0326.0109.0
0466.0111.0207.0116.0
05136.078.0145.0141.0
06152.079.0153.0116.0
07124.099.0184.093.0
08135.098.0138.0129.0
09111.0112.0134.0143.0
10163.057.0172.0108.0
1196.0169.0186.049.0
12387.02.04.0107.0
130.00.0498.02.0
14493.00.04.03.0
153.01.08.0488.0
16483.03.00.014.0
17422.05.057.016.0
1870.084.0314.032.0
19172.096.0195.037.0
PWM
ACGT
01-0.6280.587-0.1-0.271
02-0.689-0.86-0.4520.891
03-1.114-1.5610.951-0.135
04-0.628-0.1170.5-0.074
050.083-0.4640.1470.119
060.193-0.4520.2-0.074
07-0.008-0.230.383-0.291
080.076-0.240.0980.031
09-0.117-0.1080.0690.133
100.263-0.7710.316-0.144
11-0.260.2980.393-0.918
121.122-3.573-3.126-0.153
13-4.4-4.41.373-3.573
141.363-4.4-3.126-3.325
15-3.325-3.903-2.5841.353
161.343-3.325-4.4-2.096
171.208-2.961-0.771-1.975
18-0.57-0.3920.914-1.328
190.316-0.260.44-1.189