Model info
Transcription factorGata2
ModelGATA2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusdvAGATAASvd
Best auROC (human)0.9462290825668087
Best auROC (mouse)0.9625641162083794
Peak sets in benchmark (human)84
Peak sets in benchmark (mouse)54
Aligned words500
TF familyGATA-type zinc fingers{2.2.1}
TF subfamilyTwo zinc-finger GATA factors{2.2.1.1}
MGI95662
EntrezGene14461
UniProt IDGATA2_MOUSE
UniProt ACO09100
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.3862749999999995
0.0005 6.18888
0.0001 7.852465
GTEx tissue expression atlas Gata2 expression
Motifs in JASPAR
PCM
ACGT
01175.058.0166.0101.0
0282.0218.0174.026.0
03376.05.03.0116.0
040.01.0497.02.0
05489.07.03.01.0
068.020.024.0448.0
07431.025.015.029.0
08385.011.093.011.0
0974.0120.0284.022.0
10209.087.0185.019.0
11209.072.0137.082.0
PWM
ACGT
010.333-0.7540.281-0.21
02-0.4150.5510.327-1.525
031.093-2.961-3.325-0.074
04-4.4-3.9031.371-3.573
051.355-2.694-3.325-3.903
06-2.584-1.77-1.61.268
071.229-1.561-2.034-1.421
081.117-2.311-0.291-2.311
09-0.516-0.040.814-1.681
100.509-0.3570.388-1.818
110.509-0.5430.091-0.415