Model info
Transcription factorGata2
ModelGATA2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusdvAGATAASvd
Best auROC (human)0.9462290825668087
Best auROC (mouse)0.9625641162083794
Peak sets in benchmark (human)84
Peak sets in benchmark (mouse)54
Aligned words500
TF familyGATA-type zinc fingers{2.2.1}
TF subfamilyTwo zinc-finger GATA factors{2.2.1.1}
MGI95662
EntrezGene14461
UniProt IDGATA2_MOUSE
UniProt ACO09100
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.38241
0.0005 6.19134
0.0001 7.85253
GTEx tissue expression atlas Gata2 expression
ReMap ChIP-seq dataset list Gata2 datasets
Motifs in JASPAR
PCM
ACGT
01175.058.0166.0101.0
0282.0218.0174.026.0
03376.05.03.0116.0
040.01.0497.02.0
05489.07.03.01.0
068.020.024.0448.0
07431.025.015.029.0
08385.011.093.011.0
0974.0120.0284.022.0
10209.087.0185.019.0
11209.072.0137.082.0
PWM
ACGT
010.333-0.7540.281-0.21
02-0.4150.5510.327-1.525
031.093-2.961-3.325-0.074
04-4.4-3.9031.371-3.573
051.355-2.694-3.325-3.903
06-2.584-1.77-1.61.268
071.229-1.561-2.034-1.421
081.117-2.311-0.291-2.311
09-0.516-0.040.814-1.681
100.509-0.3570.388-1.818
110.509-0.5430.091-0.415