Model info
Transcription factorGata3
ModelGATA3_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusdvAGATARvvdbh
Best auROC (human)0.902511457444951
Best auROC (mouse)0.9120937844460345
Peak sets in benchmark (human)98
Peak sets in benchmark (mouse)60
Aligned words500
TF familyGATA-type zinc fingers{2.2.1}
TF subfamilyTwo zinc-finger GATA factors{2.2.1.1}
MGI95663
EntrezGene14462
UniProt IDGATA3_MOUSE
UniProt ACP23772
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.46521
0.0005 6.30971
0.0001 7.9474100000000005
GTEx tissue expression atlas Gata3 expression
Motifs in JASPAR
PCM
ACGT
01194.071.0141.094.0
02141.0184.0125.050.0
03364.09.04.0123.0
043.00.0496.01.0
05494.03.02.01.0
069.010.025.0456.0
07434.011.03.052.0
08372.019.090.019.0
09101.0153.0214.032.0
10255.0117.0115.013.0
11265.048.070.0117.0
1254.0152.090.0204.0
13134.0198.055.0113.0
PWM
ACGT
010.435-0.5560.119-0.281
020.1190.3830.0-0.898
031.061-2.484-3.126-0.016
04-3.325-4.41.369-3.903
051.365-3.325-3.573-3.903
06-2.484-2.394-1.5611.285
071.236-2.311-3.325-0.86
081.082-1.818-0.324-1.818
09-0.210.20.533-1.328
100.707-0.065-0.082-2.163
110.745-0.938-0.57-0.065
12-0.8230.193-0.3240.485
130.0690.455-0.805-0.1