Model info
Transcription factorGata5
ModelGATA5_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length17
Quality
D
Motif rank
0
ConsensusWvMnWGATAWbnhdRhd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words13
TF familyGATA-type zinc fingers{2.2.1}
TF subfamilyTwo zinc-finger GATA factors{2.2.1.1}
MGI109497
EntrezGene14464
UniProt IDGATA5_MOUSE
UniProt ACP97489
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.61576
0.0005 6.25341
0.0001 7.54861
GTEx tissue expression atlas Gata5 expression
Motifs in JASPAR
PCM
ACGT
014.0341.0091.1216.836
025.1553.813.0261.009
039.191.7931.0091.009
043.9222.1294.1472.802
056.8360.02.1294.034
060.00.013.00.0
0713.00.00.00.0
080.00.00.013.0
098.9660.00.04.034
108.9660.01.9052.129
111.0095.942.9143.138
122.0172.8022.0176.164
132.0173.811.9055.267
145.7161.0094.0342.241
155.0430.06.9481.009
165.1554.0341.0092.802
172.5221.5133.535.435
PWM
ACGT
010.184-0.858-0.7920.653
020.3990.135-0.059-0.858
030.927-0.469-0.858-0.858
040.159-0.340.207-0.122
050.653-1.803-0.340.184
06-1.803-1.8031.254-1.803
071.254-1.803-1.803-1.803
08-1.803-1.803-1.8031.254
090.904-1.803-1.8030.184
100.904-1.803-0.424-0.34
11-0.8580.525-0.09-0.029
12-0.381-0.122-0.3810.559
13-0.3810.135-0.4240.418
140.491-0.8580.184-0.3
150.379-1.8030.668-0.858
160.3990.184-0.858-0.122
17-0.207-0.5910.070.446