Model info
Transcription factorGata5
ModelGATA5_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length17
Quality
D
Motif rank
0
ConsensusWvMnWGATAWbnhdRhd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words13
TF familyGATA-type zinc fingers{2.2.1}
TF subfamilyTwo zinc-finger GATA factors{2.2.1.1}
MGI109497
EntrezGene14464
UniProt IDGATA5_MOUSE
UniProt ACP97489
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.61191
0.0005 6.25591
0.0001 7.54871
GTEx tissue expression atlas Gata5 expression
ReMap ChIP-seq dataset list Gata5 datasets
Motifs in JASPAR
PCM
ACGT
014.0341.0091.1216.836
025.1553.813.0261.009
039.191.7931.0091.009
043.9222.1294.1472.802
056.8360.02.1294.034
060.00.013.00.0
0713.00.00.00.0
080.00.00.013.0
098.9660.00.04.034
108.9660.01.9052.129
111.0095.942.9143.138
122.0172.8022.0176.164
132.0173.811.9055.267
145.7161.0094.0342.241
155.0430.06.9481.009
165.1554.0341.0092.802
172.5221.5133.535.435
PWM
ACGT
010.184-0.858-0.7920.653
020.3990.135-0.059-0.858
030.927-0.469-0.858-0.858
040.159-0.340.207-0.122
050.653-1.803-0.340.184
06-1.803-1.8031.254-1.803
071.254-1.803-1.803-1.803
08-1.803-1.803-1.8031.254
090.904-1.803-1.8030.184
100.904-1.803-0.424-0.34
11-0.8580.525-0.09-0.029
12-0.381-0.122-0.3810.559
13-0.3810.135-0.4240.418
140.491-0.8580.184-0.3
150.379-1.8030.668-0.858
160.3990.184-0.858-0.122
17-0.207-0.5910.070.446