Model info
Transcription factorGATA6
ModelGATA6_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusdvAGATAAGRddd
Best auROC (human)0.9697874834365883
Best auROC (mouse)0.9318931039849481
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)7
Aligned words500
TF familyGATA-type zinc fingers{2.2.1}
TF subfamilyTwo zinc-finger GATA factors{2.2.1.1}
HGNC4174
EntrezGene2627
UniProt IDGATA6_HUMAN
UniProt ACQ92908
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.66371
0.0005 5.73231
0.0001 8.01365
GTEx tissue expression atlas GATA6 expression
ReMap ChIP-seq dataset list GATA6 datasets
Motifs in JASPAR
PCM
ACGT
01169.077.0166.088.0
02123.0204.0133.040.0
03364.00.03.0133.0
040.00.0500.00.0
05497.00.00.03.0
065.01.00.0494.0
07459.05.04.032.0
08475.02.014.09.0
0918.054.0424.04.0
10300.051.0132.017.0
11116.072.081.0231.0
12261.065.072.0102.0
13251.065.098.086.0
PWM
ACGT
010.298-0.4770.281-0.346
02-0.0160.4850.061-1.114
031.061-4.4-3.3250.061
04-4.4-4.41.377-4.4
051.371-4.4-4.4-3.325
06-2.961-3.903-4.41.365
071.292-2.961-3.126-1.328
081.326-3.573-2.096-2.484
09-1.868-0.8231.213-3.126
100.868-0.8790.054-1.92
11-0.074-0.543-0.4270.608
120.73-0.643-0.543-0.201
130.691-0.643-0.24-0.368