Model info
Transcription factorGata6
ModelGATA6_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusvWGATAASvn
Best auROC (human)0.9634615879074746
Best auROC (mouse)0.969925759639856
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)7
Aligned words503
TF familyGATA-type zinc fingers{2.2.1}
TF subfamilyTwo zinc-finger GATA factors{2.2.1.1}
MGI107516
EntrezGene14465
UniProt IDGATA6_MOUSE
UniProt ACQ61169
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.13107
0.0005 11.98904
0.0001 15.86952
GTEx tissue expression atlas Gata6 expression
ReMap ChIP-seq dataset list Gata6 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0162.03.01.012.075.09.01.071.0146.018.02.032.033.03.03.029.0
026.00.0310.00.02.00.031.00.00.00.07.00.01.00.0143.00.0
039.00.00.00.00.00.00.00.0487.00.04.00.00.00.00.00.0
047.02.014.0473.00.00.00.00.02.00.00.02.00.00.00.00.0
058.00.01.00.02.00.00.00.011.00.00.03.0432.04.010.029.0
06401.08.035.09.01.03.00.00.08.00.03.00.028.01.03.00.0
0744.056.0318.020.02.02.08.00.06.013.017.05.02.02.05.00.0
0812.015.023.04.023.022.027.01.0100.060.0171.017.03.05.015.02.0
0932.018.063.025.031.030.021.020.065.064.068.039.07.06.06.05.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.679-2.234-3.126-0.9380.868-1.215-3.1260.8141.532-0.543-2.5840.0230.054-2.234-2.234-0.074
02-1.6-4.42.283-4.4-2.584-4.4-0.008-4.4-4.4-4.4-1.454-4.4-3.126-4.41.511-4.4
03-1.215-4.4-4.4-4.4-4.4-4.4-4.4-4.42.735-4.4-1.975-4.4-4.4-4.4-4.4-4.4
04-1.454-2.584-0.7882.706-4.4-4.4-4.4-4.4-2.584-4.4-4.4-2.584-4.4-4.4-4.4-4.4
05-1.328-4.4-3.126-4.4-2.584-4.4-4.4-4.4-1.022-4.4-4.4-2.2342.615-1.975-1.114-0.074
062.541-1.3280.112-1.215-3.126-2.234-4.4-4.4-1.328-4.4-2.234-4.4-0.108-3.126-2.234-4.4
070.3390.5782.309-0.439-2.584-2.584-1.328-4.4-1.6-0.86-0.599-1.77-2.584-2.584-1.77-4.4
08-0.938-0.721-0.302-1.975-0.302-0.346-0.144-3.1261.1550.6461.69-0.599-2.234-1.77-0.721-2.584
090.023-0.5430.695-0.22-0.008-0.04-0.392-0.4390.7260.7110.7710.219-1.454-1.6-1.6-1.77