Model info
Transcription factorGata6
ModelGATA6_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusdvWGATAASv
Best auROC (human)0.9584020712886299
Best auROC (mouse)0.9680710349952009
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)7
Aligned words500
TF familyGATA-type zinc fingers{2.2.1}
TF subfamilyTwo zinc-finger GATA factors{2.2.1.1}
MGI107516
EntrezGene14465
UniProt IDGATA6_MOUSE
UniProt ACQ61169
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.115825
0.0005 5.976845
0.0001 7.71787
GTEx tissue expression atlas Gata6 expression
Motifs in JASPAR
PCM
ACGT
01142.082.0188.088.0
0268.0167.0207.058.0
03314.031.09.0146.0
045.01.0492.02.0
05492.03.03.02.0
0611.013.023.0453.0
07468.03.04.025.0
08437.015.042.06.0
0958.075.0344.023.0
10140.0105.0232.023.0
PWM
ACGT
010.126-0.4150.404-0.346
02-0.5990.2870.5-0.754
030.914-1.358-2.4840.154
04-2.961-3.9031.361-3.573
051.361-3.325-3.325-3.573
06-2.311-2.163-1.641.279
071.311-3.325-3.126-1.561
081.243-2.034-1.067-2.819
09-0.754-0.5031.004-1.64
100.112-0.1720.613-1.64