Model info
Transcription factorGata6
ModelGATA6_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusdvWGATAASv
Best auROC (human)0.9584020712886299
Best auROC (mouse)0.9680710349952009
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)7
Aligned words500
TF familyGATA-type zinc fingers{2.2.1}
TF subfamilyTwo zinc-finger GATA factors{2.2.1.1}
MGI107516
EntrezGene14465
UniProt IDGATA6_MOUSE
UniProt ACQ61169
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.10911
0.0005 5.97843
0.0001 7.73069
GTEx tissue expression atlas Gata6 expression
ReMap ChIP-seq dataset list Gata6 datasets
Motifs in JASPAR
PCM
ACGT
01142.082.0188.088.0
0268.0167.0207.058.0
03314.031.09.0146.0
045.01.0492.02.0
05492.03.03.02.0
0611.013.023.0453.0
07468.03.04.025.0
08437.015.042.06.0
0958.075.0344.023.0
10140.0105.0232.023.0
PWM
ACGT
010.126-0.4150.404-0.346
02-0.5990.2870.5-0.754
030.914-1.358-2.4840.154
04-2.961-3.9031.361-3.573
051.361-3.325-3.325-3.573
06-2.311-2.163-1.641.279
071.311-3.325-3.126-1.561
081.243-2.034-1.067-2.819
09-0.754-0.5031.004-1.64
100.112-0.1720.613-1.64