Model info
Transcription factorGBX1
ModelGBX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length17
Quality
D
Motif rank
0
ConsensusbTAATTAvbnhhWWWdd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words38677
TF familyHOX-related factors{3.1.1}
TF subfamilyGBX (Gastrulation brain homeobox){3.1.1.11}
HGNC4185
EntrezGene2636
UniProt IDGBX1_HUMAN
UniProt ACQ14549
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.14831
0.0005 6.44241
0.0001 8.71741
GTEx tissue expression atlas GBX1 expression
ReMap ChIP-seq dataset list GBX1 datasets
Motifs in JASPAR
PCM
ACGT
014426.64513584.497408.51510726.166
021453.5783944.7341328.55229418.952
0335723.104127.639205.75489.32
0436145.3560.1530.1530.153
050.00.012.15936133.657
060.0179.801249.30635716.71
0723323.9290.012796.95524.932
089492.4547730.57117247.4261675.365
094167.38413714.8236197.54812066.061
107143.39310997.3916997.44811007.584
1112177.1818987.8314154.25910826.545
1215274.6765705.0562343.16712822.917
1316590.6612488.6571026.15816040.34
1418712.8651013.534695.13915724.278
1516170.3771084.3771135.55117755.511
1611498.4722409.513307.60918930.225
1710693.8334713.2226879.74713859.015
PWM
ACGT
01-0.7130.408-0.1990.171
02-1.826-0.829-1.9151.18
031.374-4.24-3.77-4.588
041.386-8.088-8.088-8.088
05-8.145-8.145-6.4161.386
06-8.145-3.903-3.581.374
070.948-8.1450.348-5.793
080.049-0.1560.646-1.684
09-0.7740.417-0.3770.289
10-0.2350.196-0.2560.197
110.298-0.005-0.7770.181
120.525-0.46-1.3490.35
130.607-1.289-2.1730.574
140.728-2.186-2.5610.554
150.582-2.118-2.0720.675
160.241-1.321-1.0050.739
170.168-0.651-0.2730.428