Model info
Transcription factorGBX2
ModelGBX2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length17
Quality
D
Motif rank
0
ConsensusbYAATTRvbnhhhWWWd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words12613
TF familyHOX-related factors{3.1.1}
TF subfamilyGBX (Gastrulation brain homeobox){3.1.1.11}
HGNC4186
EntrezGene2637
UniProt IDGBX2_HUMAN
UniProt ACP52951
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.55671
0.0005 6.55551
0.0001 8.51081
GTEx tissue expression atlas GBX2 expression
ReMap ChIP-seq dataset list GBX2 datasets
Motifs in JASPAR
PCM
ACGT
011626.684417.8272263.6032935.901
02460.1341744.673370.5728668.633
0310663.071243.142199.535138.264
0410881.647180.60882.59499.162
0558.728100.58850.71411033.981
060.0289.769118.52710835.716
077190.57184.6143862.4076.42
081668.5213497.8025058.5761019.112
09930.1194665.0231447.0094201.861
101908.1954350.4722598.7712386.572
113151.9953224.821172.7213694.475
123675.5472227.016897.0164444.432
134237.2751410.723517.7565078.257
146188.877842.141464.1223748.872
155738.262507.927361.2894636.533
163420.354711.755625.1466486.756
173241.4961145.8291738.0935118.592
PWM
ACGT
01-0.5460.452-0.2160.043
02-1.806-0.476-2.0211.126
031.333-2.439-2.635-2.996
041.353-2.733-3.5-3.322
05-3.83-3.308-3.9711.367
06-7.095-2.265-3.1481.349
070.939-2.7110.318-5.773
08-0.5210.2180.587-1.013
09-1.1040.506-0.6630.402
10-0.3870.436-0.078-0.164
110.1140.137-0.8730.273
120.268-0.233-1.140.458
130.41-0.689-1.6880.591
140.789-1.203-1.7970.288
150.713-1.707-2.0460.5
160.196-1.371-1.50.836
170.142-0.896-0.480.599