Model info
Transcription factorGcm1
ModelGCM1_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length14
Quality
D
Motif rank
0
ConsensushWnATGMKGGYhbb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words12
TF familyGCM factors{7.2.1}
TF subfamilyGCMa (GCM1){7.2.1.0.1}
MGI108045
EntrezGene14531
UniProt IDGCM1_MOUSE
UniProt ACP70348
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.86466
0.0005 5.53106
0.0001 6.980860000000001
GTEx tissue expression atlas Gcm1 expression
Motifs in JASPAR
PCM
ACGT
013.7784.2221.03.0
025.2221.00.7785.0
033.04.1112.8892.0
049.8892.1110.00.0
050.00.00.012.0
060.00.012.00.0
072.1117.8890.02.0
080.01.1117.03.889
090.00.012.00.0
100.00.012.00.0
111.04.00.7786.222
124.7783.1112.02.111
131.03.8893.1114.0
141.02.2224.04.778
PWM
ACGT
010.1950.291-0.8040.0
020.479-0.804-0.9510.44
030.00.268-0.031-0.323
041.066-0.282-1.763-1.763
05-1.763-1.763-1.7631.249
06-1.763-1.7631.249-1.763
07-0.2820.854-1.763-0.323
08-1.763-0.7370.7440.22
09-1.763-1.7631.249-1.763
10-1.763-1.7631.249-1.763
11-0.8040.244-0.9510.636
120.3990.03-0.323-0.282
13-0.8040.220.030.244
14-0.804-0.2420.2440.399