Model info
Transcription factorGcm1
ModelGCM1_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length14
Quality
D
Motif rank
0
ConsensushWnATGMKGGYhbb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words12
TF familyGCM factors{7.2.1}
TF subfamilyGCMa (GCM1){7.2.1.0.1}
MGI108045
EntrezGene14531
UniProt IDGCM1_MOUSE
UniProt ACP70348
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.86041
0.0005 5.53301
0.0001 6.98121
GTEx tissue expression atlas Gcm1 expression
ReMap ChIP-seq dataset list Gcm1 datasets
Motifs in JASPAR
PCM
ACGT
013.7784.2221.03.0
025.2221.00.7785.0
033.04.1112.8892.0
049.8892.1110.00.0
050.00.00.012.0
060.00.012.00.0
072.1117.8890.02.0
080.01.1117.03.889
090.00.012.00.0
100.00.012.00.0
111.04.00.7786.222
124.7783.1112.02.111
131.03.8893.1114.0
141.02.2224.04.778
PWM
ACGT
010.1950.291-0.8040.0
020.479-0.804-0.9510.44
030.00.268-0.031-0.323
041.066-0.282-1.763-1.763
05-1.763-1.763-1.7631.249
06-1.763-1.7631.249-1.763
07-0.2820.854-1.763-0.323
08-1.763-0.7370.7440.22
09-1.763-1.7631.249-1.763
10-1.763-1.7631.249-1.763
11-0.8040.244-0.9510.636
120.3990.03-0.323-0.282
13-0.8040.220.030.244
14-0.804-0.2420.2440.399