Model info
Transcription factorNR3C1
ModelGCR_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
1
ConsensushvRGRACAbdvh
Best auROC (human)0.9304697740345509
Best auROC (mouse)0.9249849447936499
Peak sets in benchmark (human)143
Peak sets in benchmark (mouse)119
Aligned words500
TF familySteroid hormone receptors (NR3){2.1.1}
TF subfamilyGR-like receptors (NR3C){2.1.1.1}
HGNC7978
EntrezGene2908
UniProt IDGCR_HUMAN
UniProt ACP04150
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.46031
0.0005 6.50691
0.0001 7.98866
GTEx tissue expression atlas NR3C1 expression
ReMap ChIP-seq dataset list NR3C1 datasets
Motifs in JASPAR
PCM
ACGT
01192.0153.055.0100.0
02213.070.0153.064.0
03247.01.0246.06.0
042.01.0497.00.0
05305.022.098.075.0
06494.04.02.00.0
071.0497.02.00.0
08491.00.01.08.0
0961.094.0267.078.0
10244.041.089.0126.0
11172.0122.0156.050.0
12143.0105.027.0225.0
PWM
ACGT
010.4250.2-0.805-0.22
020.528-0.570.2-0.658
030.675-3.9030.671-2.819
04-3.573-3.9031.371-4.4
050.885-1.681-0.24-0.503
061.365-3.126-3.573-4.4
07-3.9031.371-3.573-4.4
081.359-4.4-3.903-2.584
09-0.705-0.2810.752-0.464
100.663-1.09-0.3350.008
110.316-0.0240.219-0.898
120.133-0.172-1.4890.582