Transcription factor | Nr3c1 | ||||||||
Model | GCR_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 21 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nvvnvRGvACAvRvWGTnMhn | ||||||||
Best auROC (human) | 0.983 | ||||||||
Best auROC (mouse) | 0.988 | ||||||||
Peak sets in benchmark (human) | 143 | ||||||||
Peak sets in benchmark (mouse) | 119 | ||||||||
Aligned words | 747 | ||||||||
TF family | Steroid hormone receptors (NR3) {2.1.1} | ||||||||
TF subfamily | GR-like receptors (NR3C) {2.1.1.1} | ||||||||
MGI | MGI:95824 | ||||||||
EntrezGene | |||||||||
UniProt ID | GCR_MOUSE | ||||||||
UniProt AC | P06537 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Nr3c1 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 19.0 | 6.0 | 89.0 | 9.0 | 23.0 | 20.0 | 8.0 | 17.0 | 22.0 | 9.0 | 35.0 | 7.0 | 23.0 | 8.0 | 33.0 | 7.0 |
02 | 21.0 | 31.0 | 30.0 | 5.0 | 24.0 | 12.0 | 2.0 | 5.0 | 69.0 | 47.0 | 28.0 | 21.0 | 9.0 | 15.0 | 10.0 | 6.0 |
03 | 26.0 | 21.0 | 63.0 | 13.0 | 33.0 | 37.0 | 3.0 | 32.0 | 23.0 | 18.0 | 14.0 | 15.0 | 5.0 | 17.0 | 5.0 | 10.0 |
04 | 29.0 | 23.0 | 30.0 | 5.0 | 33.0 | 29.0 | 5.0 | 26.0 | 52.0 | 11.0 | 15.0 | 7.0 | 15.0 | 12.0 | 36.0 | 7.0 |
05 | 32.0 | 1.0 | 92.0 | 4.0 | 65.0 | 0.0 | 4.0 | 6.0 | 29.0 | 1.0 | 55.0 | 1.0 | 16.0 | 1.0 | 28.0 | 0.0 |
06 | 11.0 | 1.0 | 126.0 | 4.0 | 2.0 | 0.0 | 1.0 | 0.0 | 46.0 | 1.0 | 127.0 | 5.0 | 1.0 | 0.0 | 10.0 | 0.0 |
07 | 10.0 | 2.0 | 45.0 | 3.0 | 2.0 | 0.0 | 0.0 | 0.0 | 105.0 | 37.0 | 101.0 | 21.0 | 2.0 | 2.0 | 2.0 | 3.0 |
08 | 117.0 | 0.0 | 1.0 | 1.0 | 41.0 | 0.0 | 0.0 | 0.0 | 146.0 | 0.0 | 2.0 | 0.0 | 25.0 | 0.0 | 1.0 | 1.0 |
09 | 0.0 | 291.0 | 38.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 4.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 |
10 | 0.0 | 0.0 | 0.0 | 0.0 | 268.0 | 4.0 | 1.0 | 24.0 | 38.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
11 | 49.0 | 77.0 | 158.0 | 22.0 | 0.0 | 2.0 | 0.0 | 2.0 | 0.0 | 0.0 | 1.0 | 0.0 | 2.0 | 8.0 | 12.0 | 2.0 |
12 | 36.0 | 2.0 | 12.0 | 1.0 | 66.0 | 7.0 | 9.0 | 5.0 | 111.0 | 20.0 | 32.0 | 8.0 | 5.0 | 2.0 | 16.0 | 3.0 |
13 | 72.0 | 40.0 | 102.0 | 4.0 | 12.0 | 7.0 | 5.0 | 7.0 | 26.0 | 16.0 | 25.0 | 2.0 | 2.0 | 6.0 | 8.0 | 1.0 |
14 | 19.0 | 17.0 | 2.0 | 74.0 | 16.0 | 5.0 | 3.0 | 45.0 | 57.0 | 10.0 | 4.0 | 69.0 | 4.0 | 1.0 | 1.0 | 8.0 |
15 | 0.0 | 0.0 | 96.0 | 0.0 | 1.0 | 0.0 | 31.0 | 1.0 | 0.0 | 1.0 | 9.0 | 0.0 | 0.0 | 2.0 | 194.0 | 0.0 |
16 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 3.0 | 57.0 | 5.0 | 8.0 | 260.0 | 0.0 | 0.0 | 1.0 | 0.0 |
17 | 4.0 | 5.0 | 42.0 | 6.0 | 1.0 | 2.0 | 0.0 | 2.0 | 1.0 | 3.0 | 3.0 | 2.0 | 57.0 | 89.0 | 41.0 | 77.0 |
18 | 2.0 | 53.0 | 2.0 | 6.0 | 7.0 | 80.0 | 1.0 | 11.0 | 35.0 | 47.0 | 2.0 | 2.0 | 1.0 | 80.0 | 1.0 | 5.0 |
19 | 2.0 | 6.0 | 34.0 | 3.0 | 55.0 | 64.0 | 12.0 | 129.0 | 1.0 | 1.0 | 3.0 | 1.0 | 1.0 | 14.0 | 2.0 | 7.0 |
20 | 14.0 | 10.0 | 22.0 | 13.0 | 36.0 | 18.0 | 6.0 | 25.0 | 37.0 | 4.0 | 7.0 | 3.0 | 20.0 | 33.0 | 62.0 | 25.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.095 | -1.208 | 1.434 | -0.822 | 0.092 | -0.045 | -0.935 | -0.204 | 0.049 | -0.822 | 0.507 | -1.062 | 0.092 | -0.935 | 0.449 | -1.062 |
02 | 0.003 | 0.387 | 0.354 | -1.379 | 0.134 | -0.544 | -2.199 | -1.379 | 1.181 | 0.799 | 0.286 | 0.003 | -0.822 | -0.327 | -0.72 | -1.208 |
03 | 0.213 | 0.003 | 1.09 | -0.466 | 0.449 | 0.562 | -1.846 | 0.418 | 0.092 | -0.148 | -0.394 | -0.327 | -1.379 | -0.204 | -1.379 | -0.72 |
04 | 0.321 | 0.092 | 0.354 | -1.379 | 0.449 | 0.321 | -1.379 | 0.213 | 0.899 | -0.628 | -0.327 | -1.062 | -0.327 | -0.544 | 0.535 | -1.062 |
05 | 0.418 | -2.749 | 1.467 | -1.586 | 1.121 | -4.071 | -1.586 | -1.208 | 0.321 | -2.749 | 0.955 | -2.749 | -0.264 | -2.749 | 0.286 | -4.071 |
06 | -0.628 | -2.749 | 1.78 | -1.586 | -2.199 | -4.071 | -2.749 | -4.071 | 0.778 | -2.749 | 1.788 | -1.379 | -2.749 | -4.071 | -0.72 | -4.071 |
07 | -0.72 | -2.199 | 0.756 | -1.846 | -2.199 | -4.071 | -4.071 | -4.071 | 1.599 | 0.562 | 1.56 | 0.003 | -2.199 | -2.199 | -2.199 | -1.846 |
08 | 1.707 | -4.071 | -2.749 | -2.749 | 0.664 | -4.071 | -4.071 | -4.071 | 1.927 | -4.071 | -2.199 | -4.071 | 0.175 | -4.071 | -2.749 | -2.749 |
09 | -4.071 | 2.616 | 0.588 | -4.071 | -4.071 | -4.071 | -4.071 | -4.071 | -4.071 | -1.586 | -4.071 | -4.071 | -4.071 | -2.199 | -4.071 | -4.071 |
10 | -4.071 | -4.071 | -4.071 | -4.071 | 2.534 | -1.586 | -2.749 | 0.134 | 0.588 | -4.071 | -4.071 | -4.071 | -4.071 | -4.071 | -4.071 | -4.071 |
11 | 0.84 | 1.29 | 2.006 | 0.049 | -4.071 | -2.199 | -4.071 | -2.199 | -4.071 | -4.071 | -2.749 | -4.071 | -2.199 | -0.935 | -0.544 | -2.199 |
12 | 0.535 | -2.199 | -0.544 | -2.749 | 1.136 | -1.062 | -0.822 | -1.379 | 1.654 | -0.045 | 0.418 | -0.935 | -1.379 | -2.199 | -0.264 | -1.846 |
13 | 1.223 | 0.639 | 1.57 | -1.586 | -0.544 | -1.062 | -1.379 | -1.062 | 0.213 | -0.264 | 0.175 | -2.199 | -2.199 | -1.208 | -0.935 | -2.749 |
14 | -0.095 | -0.204 | -2.199 | 1.25 | -0.264 | -1.379 | -1.846 | 0.756 | 0.991 | -0.72 | -1.586 | 1.181 | -1.586 | -2.749 | -2.749 | -0.935 |
15 | -4.071 | -4.071 | 1.509 | -4.071 | -2.749 | -4.071 | 0.387 | -2.749 | -4.071 | -2.749 | -0.822 | -4.071 | -4.071 | -2.199 | 2.211 | -4.071 |
16 | -4.071 | -4.071 | -4.071 | -2.749 | -4.071 | -4.071 | -4.071 | -1.846 | 0.991 | -1.379 | -0.935 | 2.503 | -4.071 | -4.071 | -2.749 | -4.071 |
17 | -1.586 | -1.379 | 0.688 | -1.208 | -2.749 | -2.199 | -4.071 | -2.199 | -2.749 | -1.846 | -1.846 | -2.199 | 0.991 | 1.434 | 0.664 | 1.29 |
18 | -2.199 | 0.918 | -2.199 | -1.208 | -1.062 | 1.328 | -2.749 | -0.628 | 0.507 | 0.799 | -2.199 | -2.199 | -2.749 | 1.328 | -2.749 | -1.379 |
19 | -2.199 | -1.208 | 0.478 | -1.846 | 0.955 | 1.106 | -0.544 | 1.804 | -2.749 | -2.749 | -1.846 | -2.749 | -2.749 | -0.394 | -2.199 | -1.062 |
20 | -0.394 | -0.72 | 0.049 | -0.466 | 0.535 | -0.148 | -1.208 | 0.175 | 0.562 | -1.586 | -1.062 | -1.846 | -0.045 | 0.449 | 1.074 | 0.175 |