Model info
Transcription factorNr3c1
ModelGCR_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusRGdACAbAvWGThCY
Best auROC (human)0.978
Best auROC (mouse)0.99
Peak sets in benchmark (human)143
Peak sets in benchmark (mouse)119
Aligned words500
TF familySteroid hormone receptors (NR3) {2.1.1}
TF subfamilyGR-like receptors (NR3C) {2.1.1.1}
MGIMGI:95824
EntrezGene
UniProt IDGCR_MOUSE
UniProt ACP06537
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.38176
0.0005 5.40616
0.0001 7.525260000000001
GTEx tissue expression atlas Nr3c1 expression
Motifs in JASPAR
PCM
ACGT
01233.010.0202.055.0
0234.04.0422.040.0
03175.083.0158.084.0
04431.013.012.044.0
050.0486.09.05.0
06409.09.025.057.0
0776.0125.0202.097.0
08315.00.0185.00.0
09189.0129.0150.032.0
1083.043.021.0353.0
1111.03.0483.03.0
1227.09.016.0448.0
1381.0159.070.0190.0
1427.0433.02.038.0
1554.0194.017.0235.0
PWM
ACGT
010.617-2.3940.475-0.805
02-1.27-3.1261.208-1.114
030.333-0.4030.232-0.392
041.229-2.163-2.234-1.022
05-4.41.349-2.484-2.961
061.177-2.484-1.561-0.771
07-0.490.00.475-0.25
080.917-4.40.388-4.4
090.4090.0310.18-1.328
10-0.403-1.044-1.7251.03
11-2.311-3.3251.343-3.325
12-1.489-2.484-1.9751.268
13-0.4270.238-0.570.415
14-1.4891.234-3.573-1.163
15-0.8230.435-1.920.626