Model info
Transcription factorNr3c1
ModelGCR_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
1
ConsensushvRGRACAbdvh
Best auROC (human)0.9304697740345509
Best auROC (mouse)0.9249849447936499
Peak sets in benchmark (human)143
Peak sets in benchmark (mouse)119
Aligned words500
TF familySteroid hormone receptors (NR3){2.1.1}
TF subfamilyGR-like receptors (NR3C){2.1.1.1}
MGI95824
EntrezGene
UniProt IDGCR_MOUSE
UniProt ACP06537
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.62551
0.0005 6.63181
0.0001 8.07973
GTEx tissue expression atlas Nr3c1 expression
Motifs in JASPAR
PCM
ACGT
01192.0153.055.0100.0
02213.070.0153.064.0
03247.01.0246.06.0
042.01.0497.00.0
05305.022.098.075.0
06494.04.02.00.0
071.0497.02.00.0
08491.00.01.08.0
0961.094.0267.078.0
10244.041.089.0126.0
11172.0122.0156.050.0
12143.0105.027.0225.0
PWM
ACGT
010.4250.2-0.805-0.22
020.528-0.570.2-0.658
030.675-3.9030.671-2.819
04-3.573-3.9031.371-4.4
050.885-1.681-0.24-0.503
061.365-3.126-3.573-4.4
07-3.9031.371-3.573-4.4
081.359-4.4-3.903-2.584
09-0.705-0.2810.752-0.464
100.663-1.09-0.3350.008
110.316-0.0240.219-0.898
120.133-0.172-1.4890.582