Model info
Transcription factorGFI1B
ModelGFI1B_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusRYWSWGATTK
Best auROC (human)0.8910025480853576
Best auROC (mouse)0.8865859216649973
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)24
Aligned words503
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilyGFI1 factors{2.3.3.21}
HGNC4238
EntrezGene8328
UniProt IDGFI1B_HUMAN
UniProt ACQ5VTD9
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.48356
0.0005 6.34433
0.0001 7.9504
GTEx tissue expression atlas GFI1B expression
ReMap ChIP-seq dataset list GFI1B datasets
Motifs in JASPAR
PCM
ACGT
0178.026.0324.072.0
0229.0374.039.058.0
03150.092.09.0249.0
048.0182.0259.051.0
05200.018.013.0269.0
063.03.0492.02.0
07417.028.051.04.0
080.05.08.0487.0
092.00.00.0498.0
1018.061.099.0322.0
PWM
ACGT
01-0.464-1.5250.945-0.543
02-1.4211.088-1.138-0.754
030.18-0.302-2.4840.683
04-2.5840.3720.722-0.879
050.465-1.868-2.1630.76
06-3.325-3.3251.361-3.573
071.196-1.454-0.879-3.126
08-4.4-2.961-2.5841.351
09-3.573-4.4-4.41.373
10-1.868-0.705-0.230.939