Model info
Transcription factorGfi1b
ModelGFI1B_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusdYWSTGRTTK
Best auROC (human)0.8620991329679971
Best auROC (mouse)0.8883307444424573
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)24
Aligned words503
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilyGFI1 factors{2.3.3.21}
MGI1276578
EntrezGene14582
UniProt IDGFI1B_MOUSE
UniProt ACO70237
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.52762
0.0005 6.39992
0.0001 8.04836
GTEx tissue expression atlas Gfi1b expression
ReMap ChIP-seq dataset list Gfi1b datasets
Motifs in JASPAR
PCM
ACGT
0199.015.0256.0130.0
0237.0379.026.058.0
03163.025.03.0309.0
043.098.0365.034.0
05121.03.05.0371.0
064.02.0490.04.0
07319.015.0163.03.0
083.014.013.0470.0
099.03.052.0436.0
1023.047.095.0335.0
PWM
ACGT
01-0.23-2.0340.7110.039
02-1.1891.101-1.525-0.754
030.263-1.561-3.3250.898
04-3.325-0.241.063-1.27
05-0.032-3.325-2.9611.08
06-3.126-3.5731.357-3.126
070.929-2.0340.263-3.325
08-3.325-2.096-2.1631.315
09-2.484-3.325-0.861.241
10-1.64-0.958-0.2710.978