Model info
Transcription factorGfi1b
ModelGFI1B_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusdYWSTGRTTK
Best auROC (human)0.8620991329679971
Best auROC (mouse)0.8883307444424573
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)24
Aligned words503
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilyGFI1 factors{2.3.3.21}
MGI1276578
EntrezGene14582
UniProt IDGFI1B_MOUSE
UniProt ACO70237
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.52762
0.0005 6.39992
0.0001 8.04836
GTEx tissue expression atlas Gfi1b expression
Motifs in JASPAR
PCM
ACGT
0199.015.0256.0130.0
0237.0379.026.058.0
03163.025.03.0309.0
043.098.0365.034.0
05121.03.05.0371.0
064.02.0490.04.0
07319.015.0163.03.0
083.014.013.0470.0
099.03.052.0436.0
1023.047.095.0335.0
PWM
ACGT
01-0.23-2.0340.7110.039
02-1.1891.101-1.525-0.754
030.263-1.561-3.3250.898
04-3.325-0.241.063-1.27
05-0.032-3.325-2.9611.08
06-3.126-3.5731.357-3.126
070.929-2.0340.263-3.325
08-3.325-2.096-2.1631.315
09-2.484-3.325-0.861.241
10-1.64-0.958-0.2710.978