Model info
Transcription factorGLIS2
ModelGLIS2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length14
Quality
D
Motif rank
0
ConsensusSdhYGYGGGGGGTv
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words1681
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilyGLI-like factors{2.3.3.1}
HGNC29450
EntrezGene84662
UniProt IDGLIS2_HUMAN
UniProt ACQ9BZE0
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 -0.10109
0.0005 1.40771
0.0001 4.45941
GTEx tissue expression atlas GLIS2 expression
ReMap ChIP-seq dataset list GLIS2 datasets
Motifs in JASPAR
PCM
ACGT
01131.751253.75201.7593.75
02324.5198.5431.5726.5
03343.75394.7585.75856.75
0460.251057.2558.25505.25
0568.018.01587.08.0
0641.51178.514.5446.5
07118.252.251504.2556.25
081.00.01637.043.0
091.00.01677.03.0
102.01.01673.05.0
112.50.51677.50.5
1210.252.251660.258.25
1313.5209.589.51368.5
14486.75874.75192.75126.75
PWM
ACGT
01-1.151.09-0.729-1.485
02-0.257-0.7450.0260.546
03-0.2-0.062-1.5720.71
04-1.9160.92-1.9490.183
05-1.799-3.0571.326-3.757
06-2.2761.028-3.2510.06
07-1.257-4.6331.272-1.983
08-4.996-5.4261.356-2.242
09-4.996-5.4261.381-4.465
10-4.695-4.9961.378-4.12
11-4.574-5.1881.381-5.188
12-3.551-4.6331.371-3.732
13-3.314-0.692-1.531.178
140.1460.731-0.774-1.188