Model info
Transcription factorGRHL1
ModelGRHL1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
D
Motif rank
0
ConsensusWWCCWGTYYbnY
Best auROC (human)0.7306552485481456
Best auROC (mouse)
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)
Aligned words500
TF familyGrainyhead-related factors{6.7.1}
TF subfamilyGRH-like proteins{6.7.1.1}
HGNC17923
EntrezGene29841
UniProt IDGRHL1_HUMAN
UniProt ACQ9NZI5
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.20321
0.0005 6.00912
0.0001 7.6415
GTEx tissue expression atlas GRHL1 expression
ReMap ChIP-seq dataset list GRHL1 datasets
Motifs in JASPAR
PCM
ACGT
01331.030.046.093.0
02288.06.071.0135.0
036.0477.015.02.0
047.0415.02.076.0
05163.08.092.0237.0
062.023.0447.028.0
074.083.023.0390.0
0812.0114.021.0353.0
0927.0177.016.0280.0
1037.098.099.0266.0
11114.094.0119.0173.0
1222.0396.026.056.0
PWM
ACGT
010.966-1.389-0.979-0.291
020.828-2.819-0.5560.076
03-2.8191.33-2.034-3.573
04-2.6941.191-3.573-0.49
050.263-2.584-0.3020.634
06-3.573-1.641.265-1.454
07-3.126-0.403-1.641.129
08-2.234-0.091-1.7251.03
09-1.4890.344-1.9750.8
10-1.189-0.24-0.230.749
11-0.091-0.281-0.0490.322
12-1.6811.145-1.525-0.788