Model info
| Transcription factor | GRHL1 (GeneCards) | ||||||||
| Model | GRHL1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WWCCWGTYYbnY | ||||||||
| Best auROC (human) | 0.731 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | Grainyhead-related factors {6.7.1} | ||||||||
| TF subfamily | GRH-like proteins {6.7.1.1} | ||||||||
| HGNC | HGNC:17923 | ||||||||
| EntrezGene | GeneID:29841 (SSTAR profile) | ||||||||
| UniProt ID | GRHL1_HUMAN | ||||||||
| UniProt AC | Q9NZI5 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GRHL1 expression | ||||||||
| ReMap ChIP-seq dataset list | GRHL1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 331.0 | 30.0 | 46.0 | 93.0 |
| 02 | 288.0 | 6.0 | 71.0 | 135.0 |
| 03 | 6.0 | 477.0 | 15.0 | 2.0 |
| 04 | 7.0 | 415.0 | 2.0 | 76.0 |
| 05 | 163.0 | 8.0 | 92.0 | 237.0 |
| 06 | 2.0 | 23.0 | 447.0 | 28.0 |
| 07 | 4.0 | 83.0 | 23.0 | 390.0 |
| 08 | 12.0 | 114.0 | 21.0 | 353.0 |
| 09 | 27.0 | 177.0 | 16.0 | 280.0 |
| 10 | 37.0 | 98.0 | 99.0 | 266.0 |
| 11 | 114.0 | 94.0 | 119.0 | 173.0 |
| 12 | 22.0 | 396.0 | 26.0 | 56.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.966 | -1.389 | -0.979 | -0.291 |
| 02 | 0.828 | -2.819 | -0.556 | 0.076 |
| 03 | -2.819 | 1.33 | -2.034 | -3.573 |
| 04 | -2.694 | 1.191 | -3.573 | -0.49 |
| 05 | 0.263 | -2.584 | -0.302 | 0.634 |
| 06 | -3.573 | -1.64 | 1.265 | -1.454 |
| 07 | -3.126 | -0.403 | -1.64 | 1.129 |
| 08 | -2.234 | -0.091 | -1.725 | 1.03 |
| 09 | -1.489 | 0.344 | -1.975 | 0.8 |
| 10 | -1.189 | -0.24 | -0.23 | 0.749 |
| 11 | -0.091 | -0.281 | -0.049 | 0.322 |
| 12 | -1.681 | 1.145 | -1.525 | -0.788 |