Model info
Transcription factorGrhl2
ModelGRHL2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusRRCYdGTYYddC
Best auROC (human)0.9506498696993753
Best auROC (mouse)0.9511969744905407
Peak sets in benchmark (human)22
Peak sets in benchmark (mouse)4
Aligned words500
TF familyGrainyhead-related factors{6.7.1}
TF subfamilyGRH-like proteins{6.7.1.1}
MGI2182543
EntrezGene252973
UniProt IDGRHL2_MOUSE
UniProt ACQ8K5C0
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.76971
0.0005 5.76303
0.0001 7.67323
GTEx tissue expression atlas Grhl2 expression
ReMap ChIP-seq dataset list Grhl2 datasets
Motifs in JASPAR
PCM
ACGT
01346.09.096.049.0
02326.02.089.083.0
030.0493.07.00.0
0465.0355.02.078.0
05113.09.0152.0226.0
060.02.0498.00.0
0716.0103.00.0381.0
0814.0176.010.0300.0
0932.0113.028.0327.0
1058.024.0186.0232.0
11131.029.0149.0191.0
120.0459.04.037.0
PWM
ACGT
011.01-2.484-0.26-0.918
020.951-3.573-0.335-0.403
03-4.41.363-2.694-4.4
04-0.6431.036-3.573-0.464
05-0.1-2.4840.1930.587
06-4.4-3.5731.373-4.4
07-1.975-0.191-4.41.106
08-2.0960.339-2.3940.868
09-1.328-0.1-1.4540.954
10-0.754-1.60.3930.613
110.046-1.4210.1740.42
12-4.41.292-3.126-1.189