Model info
Transcription factorGSC2
ModelGSC2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusddvGGATKRRn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words610
TF familyPaired-related HD factors{3.1.3}
TF subfamilyGSC{3.1.3.9}
HGNC4613
EntrezGene2928
UniProt IDGSC2_HUMAN
UniProt ACO15499
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.87582
0.0005 5.64422
0.0001 7.05189
GTEx tissue expression atlas GSC2 expression
ReMap ChIP-seq dataset list GSC2 datasets
Motifs in JASPAR
PCM
ACGT
01260.2538.25253.2558.25
0272.035.0283.0220.0
03148.5286.5116.558.5
0415.061.0530.04.0
0523.04.0581.02.0
06355.00.0255.00.0
0720.039.01.0550.0
0819.015.0181.0395.0
09352.013.0217.028.0
10121.7534.75396.7556.75
1186.75144.75218.75159.75
PWM
ACGT
010.53-1.3520.503-0.946
02-0.739-1.4370.6130.363
03-0.0260.626-0.266-0.942
04-2.228-0.9011.238-3.314
05-1.835-3.3141.33-3.756
060.839-4.5660.51-4.566
07-1.965-1.334-4.0811.275
08-2.012-2.2280.170.945
090.831-2.3560.35-1.65
10-0.223-1.4440.95-0.971
11-0.556-0.0520.3580.046