Model info
Transcription factorGSC
ModelGSC_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusddvGGATTAdb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words1242
TF familyPaired-related HD factors{3.1.3}
TF subfamilyGSC{3.1.3.9}
HGNC4612
EntrezGene145258
UniProt IDGSC_HUMAN
UniProt ACP56915
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.91152
0.0005 5.36531
0.0001 8.03323
GTEx tissue expression atlas GSC expression
ReMap ChIP-seq dataset list GSC datasets
Motifs in JASPAR
PCM
ACGT
01586.5147.5282.5224.5
02461.25147.25357.25275.25
03220.75413.75446.75159.75
0465.578.51092.54.5
0541.04.01192.04.0
061238.03.00.00.0
070.00.00.01241.0
080.00.00.01241.0
091235.50.51.53.5
10411.25115.25492.25222.25
11177.5430.5387.5245.5
PWM
ACGT
010.634-0.737-0.093-0.321
020.395-0.7390.14-0.119
03-0.3380.2860.363-0.658
04-1.534-1.3581.255-3.906
05-1.987-3.9891.342-3.989
061.38-4.178-5.166-5.166
07-5.166-5.166-5.1661.382
08-5.166-5.166-5.1661.382
091.378-4.919-4.555-4.079
100.28-0.9810.459-0.331
11-0.5540.3260.221-0.233