Model info
Transcription factorGSX1
ModelGSX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length15
Quality
D
Motif rank
0
ConsensushRATKRvndddWdRK
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words277
TF familyHOX-related factors{3.1.1}
TF subfamilyGSX{3.1.1.12}
HGNC20374
EntrezGene219409
UniProt IDGSX1_HUMAN
UniProt ACQ9H4S2
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.98631
0.0005 6.66461
0.0001 8.02961
GTEx tissue expression atlas GSX1 expression
ReMap ChIP-seq dataset list GSX1 datasets
Motifs in JASPAR
PCM
ACGT
0126.7526.7518.75203.75
02198.527.529.520.5
03261.02.07.06.0
0410.255.251.25259.25
0512.02.057.0205.0
06188.03.077.08.0
0749.046.0146.035.0
0865.056.066.089.0
0978.025.067.0106.0
1083.025.056.0112.0
1153.021.049.0153.0
1246.524.538.5166.5
13141.7525.7553.7554.75
14175.525.540.534.5
1539.2523.2549.25164.25
PWM
ACGT
01-0.917-0.917-1.2511.07
021.044-0.89-0.823-1.168
031.316-3.029-2.125-2.252
04-1.799-2.359-3.2781.309
05-1.659-3.029-0.1871.076
060.99-2.7720.108-2.013
07-0.334-0.3960.739-0.66
08-0.058-0.204-0.0440.25
090.12-0.981-0.0290.422
100.181-0.981-0.2040.477
11-0.258-1.145-0.3340.785
12-0.385-1.0-0.5680.869
130.71-0.953-0.244-0.226
140.921-0.962-0.519-0.673
15-0.549-1.049-0.3290.856