Model info
Transcription factorGSX2
ModelGSX2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length16
Quality
D
Motif rank
0
ConsensusbTAATKRvnddWWWAY
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words6133
TF familyHOX-related factors{3.1.1}
TF subfamilyGSX{3.1.1.12}
HGNC24959
EntrezGene170825
UniProt IDGSX2_HUMAN
UniProt ACQ9BZM3
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.85441
0.0005 6.68941
0.0001 8.39481
GTEx tissue expression atlas GSX2 expression
ReMap ChIP-seq dataset list GSX2 datasets
Motifs in JASPAR
PCM
ACGT
01939.01966.0959.02269.0
02406.25354.25127.255245.25
035411.5172.5294.5254.5
046077.2511.2531.2513.25
05158.0328.0118.05529.0
06795.0303.01526.03509.0
073485.0355.01845.0448.0
081225.01553.02536.0819.0
091795.01213.0990.02135.0
101915.0777.0943.02498.0
111890.0605.0606.03032.0
121162.0727.0544.03700.0
13945.25349.25393.254445.25
144501.75294.75659.75676.75
155184.25207.25337.25404.25
16708.5725.5625.54073.5
PWM
ACGT
01-0.4890.248-0.4680.391
02-1.324-1.46-2.4731.229
031.26-2.174-1.644-1.789
041.376-4.739-3.827-4.6
05-2.26-1.537-2.5481.282
06-0.655-1.616-0.0050.827
070.82-1.4580.185-1.227
08-0.2240.0130.503-0.626
090.157-0.234-0.4370.331
100.222-0.678-0.4850.488
110.209-0.928-0.9260.681
12-0.277-0.745-1.0340.88
13-0.483-1.475-1.3571.064
141.076-1.643-0.841-0.816
151.217-1.992-1.509-1.329
16-0.77-0.747-0.8950.976