Model info
Transcription factorHand1
ModelHAND1_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
C
Motif rank
0
ConsensusddbYCTGShhWnYvTCW
Best auROC (human)
Best auROC (mouse)0.9951606774596644
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)3
Aligned words500
TF familyTal-related factors{1.2.3}
TF subfamilyTwist-like factors{1.2.3.2}
MGI103577
EntrezGene15110
UniProt IDHAND1_MOUSE
UniProt ACQ64279
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.91601
0.0005 5.89781
0.0001 7.87241
GTEx tissue expression atlas Hand1 expression
ReMap ChIP-seq dataset list Hand1 datasets
Motifs in JASPAR
PCM
ACGT
01121.057.0220.0102.0
0277.066.0248.0109.0
0368.0133.0226.073.0
0419.0201.026.0254.0
0512.0474.03.011.0
068.00.00.0492.0
071.01.0494.04.0
081.0112.0307.080.0
0991.0152.063.0194.0
1096.0126.047.0231.0
11168.051.014.0267.0
1289.0111.0146.0154.0
1325.0118.037.0320.0
1485.0156.0199.060.0
1512.013.017.0458.0
1610.0434.025.031.0
17306.054.018.0122.0
PWM
ACGT
01-0.032-0.7710.56-0.201
02-0.477-0.6280.679-0.135
03-0.5990.0610.587-0.529
04-1.8180.47-1.5250.703
05-2.2341.324-3.325-2.311
06-2.584-4.4-4.41.361
07-3.903-3.9031.365-3.126
08-3.903-0.1080.891-0.439
09-0.3130.193-0.6730.435
10-0.260.008-0.9580.608
110.293-0.879-2.0960.752
12-0.335-0.1170.1540.206
13-1.561-0.057-1.1890.932
14-0.380.2190.46-0.721
15-2.234-2.163-1.921.29
16-2.3941.236-1.561-1.358
170.888-0.823-1.868-0.024