Model info
Transcription factorHand1
ModelHAND1_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
C
Motif rank
0
ConsensusddbYCTGShhWnYvTCW
Best auROC (human)
Best auROC (mouse)0.9951606774596644
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)3
Aligned words500
TF familyTal-related factors{1.2.3}
TF subfamilyTwist-like factors{1.2.3.2}
MGI103577
EntrezGene15110
UniProt IDHAND1_MOUSE
UniProt ACQ64279
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.91601
0.0005 5.89781
0.0001 7.87241
GTEx tissue expression atlas Hand1 expression
Motifs in JASPAR
PCM
ACGT
01121.057.0220.0102.0
0277.066.0248.0109.0
0368.0133.0226.073.0
0419.0201.026.0254.0
0512.0474.03.011.0
068.00.00.0492.0
071.01.0494.04.0
081.0112.0307.080.0
0991.0152.063.0194.0
1096.0126.047.0231.0
11168.051.014.0267.0
1289.0111.0146.0154.0
1325.0118.037.0320.0
1485.0156.0199.060.0
1512.013.017.0458.0
1610.0434.025.031.0
17306.054.018.0122.0
PWM
ACGT
01-0.032-0.7710.56-0.201
02-0.477-0.6280.679-0.135
03-0.5990.0610.587-0.529
04-1.8180.47-1.5250.703
05-2.2341.324-3.325-2.311
06-2.584-4.4-4.41.361
07-3.903-3.9031.365-3.126
08-3.903-0.1080.891-0.439
09-0.3130.193-0.6730.435
10-0.260.008-0.9580.608
110.293-0.879-2.0960.752
12-0.335-0.1170.1540.206
13-1.561-0.057-1.1890.932
14-0.380.2190.46-0.721
15-2.234-2.163-1.921.29
16-2.3941.236-1.561-1.358
170.888-0.823-1.868-0.024