Model info
Transcription factorHand1
ModelHAND1_MOUSE.H11MO.1.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length7
Quality
C
Motif rank
1
ConsensusdSYCTGS
Best auROC (human)
Best auROC (mouse)0.9514080638749097
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)3
Aligned words500
TF familyTal-related factors{1.2.3}
TF subfamilyTwist-like factors{1.2.3.2}
MGI103577
EntrezGene15110
UniProt IDHAND1_MOUSE
UniProt ACQ64279
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.54063
0.0005 6.38805
0.0001 7.21158
GTEx tissue expression atlas Hand1 expression
ReMap ChIP-seq dataset list Hand1 datasets
Motifs in JASPAR
PCM
ACGT
0176.026.0256.0142.0
0233.0169.0266.032.0
039.0265.011.0215.0
041.0497.01.01.0
051.01.01.0497.0
060.00.0499.01.0
077.070.0370.053.0
PWM
ACGT
01-0.49-1.5250.7110.126
02-1.2980.2980.749-1.328
03-2.4840.745-2.3110.537
04-3.9031.371-3.903-3.903
05-3.903-3.903-3.9031.371
06-4.4-4.41.375-3.903
07-2.694-0.571.077-0.841